Evidence map›Paper›PMID 24904010›Full record

ArticleGenome biology and evolution2014

Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii.

Jean-Claude Ogier, Sylvie Pagès, Gaëlle Bisch, Hélène Chiapello, Claudine Médigue, Zoé Rouy, Corinne Teyssier, Stéphanie Vincent, Patrick Tailliez, Alain Givaudan and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Pleiotropic role of PAX cyclolipopeptides in theApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Clinical Progression ofPathogens (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. A draft genome ofJournal of nematology · 2020
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jean-Claude OgierINRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France.
Sylvie PagèsINRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France.
Gaëlle BischINRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France.
Hélène ChiapelloINRA Toulouse Midi-Pyrénées, Unité MIA-T, Chemin de Borde Rouge, Castanet-Tolosan, France.
Claudine MédigueCEA, Genoscope & CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Evry, France.
Zoé RouyCEA, Genoscope & CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Evry, France.
Corinne TeyssierUniversité Montpellier 1, UFR des Sciences Pharmaceutiques et Biologiques/UMR95 Qualisud, CIRAD-Persyst, France.
Stéphanie VincentCEA, Genoscope & CNRS, UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Evry, France.
Patrick TailliezINRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France.
Alain GivaudanINRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France.
Sophie GaudriaultINRA, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), Montpellier, FranceUniversité Montpellier 2, UMR Diversité, Génomes et Interactions Microorganismes-Insectes (DGIMI), France sgaudriault@univ-montp2.fr.
Université de Montpellier · FRCentre National de la Recherche Scientifique · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria of the genus Xenorhabdus are symbionts of soil entomopathogenic nematodes of the genus Steinernema. This symbiotic association constitutes an insecticidal complex active against a wide range of insect pests. Unlike other Xenorhabdus species, Xenorhabdus poinarii is avirulent when injected into insects in the absence of its nematode host. We sequenced the genome of the X. poinarii strain G6 and the closely related but virulent X. doucetiae strain FRM16. G6 had a smaller genome (500-700 kb smaller) than virulent Xenorhabdus strains and lacked genes encoding potential virulence factors (hemolysins, type 5 secretion systems, enzymes involved in the synthesis of secondary metabolites, and toxin-antitoxin systems). The genomes of all the X. poinarii strains analyzed here had a similar small size. We did not observe the accumulation of pseudogenes, insertion sequences or decrease in coding density usually seen as a sign of genomic erosion driven by genetic drift in host-adapted bacteria. Instead, genome reduction of X. poinarii seems to have been mediated by the excision of genomic blocks from the flexible genome, as reported for the genomes of attenuated free pathogenic bacteria and some facultative mutualistic bacteria growing exclusively within hosts. This evolutionary pathway probably reflects the adaptation of X. poinarii to specific host.

Indexed as

Evolution, MolecularSymbiosisAnimalsGene DeletionGenome, BacterialGenomicsHost-Pathogen InteractionsInsectaNematodaPhylogenyVirulence FactorsXenorhabdusVirulence Factorscomparative genomicsentomopathogenic bacteriagenomic deletionLepidopteraregions of genomic plasticitySteinernema

Identifiers

PMID24904010
PMCPMC4079199
OpenAlexW2149357101

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.