Evidence map›Paper›PMID 24903619›Full record

ArticleAnnals of clinical microbiology and antimicrobials2014

Study of the frequency of Clostridium difficile tcdA, tcdB, cdtA and cdtB genes in feces of Calves in south west of Iran.

Abbas Doosti, Abbas Mokhtari-Farsani

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Fatal Systemic Infection Caused by Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Microorganisms · 2023
    Article
  5. Characterization of Food ChainMicroorganisms · 2023
    Article
  6. Antibiotics (Basel, Switzerland) · 2022
    Article
  7. Article
  8. Prevalence, Molecular Characterization and Antimicrobial Susceptibility ofInternational journal of environmental research and public health · 2021
    Article
  9. Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Review
  10. High Prevalence of Genetically RelatedFrontiers in microbiology · 2020
    Article
  11. Article
  12. Article
  13. Genomic Delineation of Zoonotic Origins ofFrontiers in public health · 2019
    Review
  14. Rapid visual detection of binary toxin producingExperimental and therapeutic medicine · 2017
    Article
  15. Isolation ofIranian journal of veterinary research · 2016
    Article
  16. Clostridium difficile in Food and Animals: A Comprehensive Review.Advances in experimental medicine and biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Abbas DoostiBiotechnology Research Center, Islamic Azad University, Shahrekord Branch, Postal Box: 166, Shahrekord, Iran. geneticsshki@yahoo.com.
Abbas Mokhtari-Farsani
Biotechnology Research Center · IRIslamic Azad University of Shahrekord · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClostridium difficile (C. difficile) is a gram-positive, toxin-producing bacillus which is an intestinal pathogen in both humans and animals and causes a range of digestive disorders including inflammation of the bowel, abdominal pain, fever and diarrhea. C. difficile toxins include enterotoxin (Toxin A), cytotoxin (Toxin B) and a binary toxin. Two large protein toxins A and B are encoded by separate genes, tcdA and tcdB. Clostridium difficile infection (CDI) mainly caused by the activity of the genes tcdA and tcdB. The binary toxin is encoded by the genes cdtA and cdtB. The binary toxin caused increased adherence of bacteria to intestinal epithelium. The aim of the present study was isolation of C. difficile from feces of calves, and study of the frequency of C. difficile virulence genes.

methods150 samples of fresh feces from calves were collected and C. difficile was isolated from feces of calves using bacterial culture methods. DNA was extracted by a genomic DNA purification kit. Then PCR method was used for definitive diagnosis of C. difficile. Multiplex PCR method performed for identification of tcdA, tcdB, cdtA and cdtB genes. In the final stage antimicrobial resistance determining was carried out by standard Bauer-Kirby disk diffusion method.

resultsC. difficile was isolated from 90 samples (60%). The tcdA was observed in 8 isolates (8.8%), tcdB in 16 isolates (17.7%), cdtA in 8 isolates (8.8%) and cdtB in 14 isolates (15.5%). Only 1 isolated (1.1%) was containing all four genes tcdA, tcdB, cdtA and cdtB, 2 isolates (2.2%) only had both tcdA and tcdB genes, and there was no sample positive only for both cdtA and cdtB. The highest rate of drug resistance was against clindamycin (100%) and the highest rate of drug sensitivity was against ciprofloxacin (50%).

conclusionThe results showed high incidence of C. difficile and also high antibiotic resistance of this bacterium, but frequency of strains containing virulence genes (tcdA, tcdB, cdtA and cdtB) was low.

Indexed as

ADP Ribose TransferasesAnimalsAnti-Bacterial AgentsBacterial ProteinsBacterial ToxinsCattleClostridioides difficileClostridium InfectionsCross-Sectional StudiesDNA, BacterialDrug Resistance, BacterialEnterotoxinsFecesIranMicrobial Sensitivity TestsPolymerase Chain Reactionactin-specific ADP-ribosyltransferase, ClostridiumADP Ribose TransferasesAnti-Bacterial AgentsBacterial ProteinsBacterial ToxinsDNA, BacterialEnterotoxinstcdA protein, Clostridium difficiletoxB protein, Clostridium difficile

Identifiers

PMID24903619
PMCPMC4060091
OpenAlexW2170343648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.