Evidence map›Paper›PMID 24901367›Full record

ArticlePLoS genetics2014

Defective i6A37 modification of mitochondrial and cytosolic tRNAs results from pathogenic mutations in TRIT1 and its substrate tRNA.

John W Yarham, Tek N Lamichhane, Angela Pyle, Sandy Mattijssen, Enrico Baruffini, Francesco Bruni, Claudia Donnini, Alex Vassilev, Langping He, Emma L Blakely and 8 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 1 synthesis or guideline pooled it, 135 citations in OpenAlex.

  1. Pooled it
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  12. bioRxiv : the preprint server for biology · 2024
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  18. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 4 countries.

John W YarhamWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Tek N LamichhaneIntramural Research Program, NICHD, NIH, Bethesda, Maryland, United States of America.
Angela PyleWellcome Trust Centre for Mitochondrial Research, Institute for Genetic Medicine, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Sandy MattijssenIntramural Research Program, NICHD, NIH, Bethesda, Maryland, United States of America.
Enrico BaruffiniDepartment of Life Sciences, University of Parma, Parma, Italy.
Francesco BruniWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Claudia DonniniDepartment of Life Sciences, University of Parma, Parma, Italy.
Alex VassilevIntramural Research Program, NICHD, NIH, Bethesda, Maryland, United States of America.
Langping HeWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Emma L BlakelyWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Helen GriffinWellcome Trust Centre for Mitochondrial Research, Institute for Genetic Medicine, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Mauro Santibanez-KorefWellcome Trust Centre for Mitochondrial Research, Institute for Genetic Medicine, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Laurence A BindoffDepartment of Neurology, Haukeland University Hospital, Bergen, Norway; Department of Clinical Medicine, University of Bergen, Bergen, Norway.
Ileana FerreroDepartment of Life Sciences, University of Parma, Parma, Italy.
Patrick F ChinneryWellcome Trust Centre for Mitochondrial Research, Institute for Genetic Medicine, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Robert McFarlandWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Richard J MaraiaIntramural Research Program, NICHD, NIH, Bethesda, Maryland, United States of America.
Robert W TaylorWellcome Trust Centre for Mitochondrial Research, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom.
Newcastle University · GBWellcome Centre for Mitochondrial Research · GBEunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of Parma · ITHaukeland University Hospital · NO

Funding

Molecular Regulation Of RNA MetabolismZIAHD000412 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MARAIA, RICHARD J · 2009 to 2025
$31.6M
Intramural NIH HHSMedical Research Council G0601943Medical Research Council G0800674Medical Research Council MR/K000608/1Wellcome Trust 096919Wellcome Trust 101876Wellcome Trust 101876/Z/13/Z
6 · The paper itself

Abstract

Identifying the genetic basis for mitochondrial diseases is technically challenging given the size of the mitochondrial proteome and the heterogeneity of disease presentations. Using next-generation exome sequencing, we identified in a patient with severe combined mitochondrial respiratory chain defects and corresponding perturbation in mitochondrial protein synthesis, a homozygous p.Arg323Gln mutation in TRIT1. This gene encodes human tRNA isopentenyltransferase, which is responsible for i6A37 modification of the anticodon loops of a small subset of cytosolic and mitochondrial tRNAs. Deficiency of i6A37 was previously shown in yeast to decrease translational efficiency and fidelity in a codon-specific manner. Modelling of the p.Arg323Gln mutation on the co-crystal structure of the homologous yeast isopentenyltransferase bound to a substrate tRNA, indicates that it is one of a series of adjacent basic side chains that interact with the tRNA backbone of the anticodon stem, somewhat removed from the catalytic center. We show that patient cells bearing the p.Arg323Gln TRIT1 mutation are severely deficient in i6A37 in both cytosolic and mitochondrial tRNAs. Complete complementation of the i6A37 deficiency of both cytosolic and mitochondrial tRNAs was achieved by transduction of patient fibroblasts with wild-type TRIT1. Moreover, we show that a previously-reported pathogenic m.7480A>G mt-tRNASer(UCN) mutation in the anticodon loop sequence A36A37A38 recognised by TRIT1 causes a loss of i6A37 modification. These data demonstrate that deficiencies of i6A37 tRNA modification should be considered a potential mechanism of human disease caused by both nuclear gene and mitochondrial DNA mutations while providing insight into the structure and function of TRIT1 in the modification of cytosolic and mitochondrial tRNAs.

Indexed as

Alkyl and Aryl TransferasesCells, CulturedCytochrome-c Oxidase DeficiencyCytosolDNA, MitochondrialElectron TransportElectron Transport Complex IVFemaleHumansMaleMitochondriaMitochondrial DiseasesProtein BiosynthesisRNARNA, MitochondrialRNA, Transferadenylate isopentenyltransferaseAlkyl and Aryl TransferasesDNA, MitochondrialElectron Transport Complex IVisopentenyl-adenosine i6a thiotransferaseRNARNA, MitochondrialRNA, TransferSchizosaccharomyces pombe ProteinsSulfurtransferasesTRIT1 protein, humantRNA isopentenyltransferase

Identifiers

PMID24901367
PMCPMC4046958
OpenAlexW2071351182

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.