Evidence map›Paper›PMID 24901216›Full record

ArticlePloS one2014

Exopolysaccharide (EPS) synthesis by Oenococcus oeni: from genes to phenotypes.

Maria Dimopoulou, Marlène Vuillemin, Hugo Campbell-Sills, Patrick M Lucas, Patricia Ballestra, Cécile Miot-Sertier, Marion Favier, Joana Coulon, Virginie Moine, Thierry Doco and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Whole genome sequence ofFrontiers in microbiology · 2023
    Article
  5. Genomic Analysis of an Excellent Wine-Making StrainPolish journal of microbiology · 2022
    Article
  6. Review
  7. Review
  8. Review
  9. Distribution of Prophages in theMicroorganisms · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Distribution of Oenococcus oeni populations in natural habitats.Applied microbiology and biotechnology · 2019
    Review
  15. New Insights Into Cinnamoyl Esterase Activity ofFrontiers in microbiology · 2019
    Article
  16. Frontiers in microbiology · 2018
    Article
  17. Mapping the Physiological Response ofFrontiers in microbiology · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Maria DimopoulouUniversité de Bordeaux, Institut polytechnique de Bordeaux, ISVV, EA 4577, Unité de recherche Oenologie, INRA USC 1366, Villenave d'Ornon, France.
Marlène VuilleminUniversité de Toulouse, INSA, UPS, INP, INRA, CNRS, LISBP, Toulouse, France.
Hugo Campbell-SillsUniversité de Bordeaux, Institut polytechnique de Bordeaux, ISVV, EA 4577, Unité de recherche Oenologie, INRA USC 1366, Villenave d'Ornon, France.
Patrick M LucasUniversité de Bordeaux, Institut polytechnique de Bordeaux, ISVV, EA 4577, Unité de recherche Oenologie, INRA USC 1366, Villenave d'Ornon, France.
Patricia BallestraUniversité de Bordeaux, Institut polytechnique de Bordeaux, ISVV, EA 4577, Unité de recherche Oenologie, INRA USC 1366, Villenave d'Ornon, France.
Cécile Miot-SertierUniversité de Bordeaux, Institut polytechnique de Bordeaux, ISVV, EA 4577, Unité de recherche Oenologie, INRA USC 1366, Villenave d'Ornon, France.
Marion FavierBioLaffort, research subsidiary of the Laffort Group, Bordeaux, France.
Joana CoulonBioLaffort, research subsidiary of the Laffort Group, Bordeaux, France.
Virginie MoineBioLaffort, research subsidiary of the Laffort Group, Bordeaux, France.
Thierry DocoINRA, UMR1083, Sciences pour l'œnologie, Montpellier, France.
Maryline RoquesINRA, UMR1083, Sciences pour l'œnologie, Montpellier, France.
Pascale WilliamsINRA, UMR1083, Sciences pour l'œnologie, Montpellier, France.
Melina PetrelUniversité de Bordeaux, Bordeaux Imaging Center, UMS 3420 CNRS - US4 INSERM, Bordeaux, France.
Etienne GontierUniversité de Bordeaux, Bordeaux Imaging Center, UMS 3420 CNRS - US4 INSERM, Bordeaux, France.
Claire MoulisUniversité de Toulouse, INSA, UPS, INP, INRA, CNRS, LISBP, Toulouse, France.
Magali Remaud-SimeonUniversité de Toulouse, INSA, UPS, INP, INRA, CNRS, LISBP, Toulouse, France.
Marguerite Dols-LafargueUniversité de Bordeaux, Institut polytechnique de Bordeaux, ISVV, EA 4577, Unité de recherche Oenologie, INRA USC 1366, Villenave d'Ornon, France.
Université de Bordeaux · FRCentre National de la Recherche Scientifique · FRSciences pour L’Œnologie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oenococcus oeni is the bacterial species which drives malolactic fermentation in wine. The analysis of 50 genomic sequences of O. oeni (14 already available and 36 newly sequenced ones) provided an inventory of the genes potentially involved in exopolysaccharide (EPS) biosynthesis. The loci identified are: two gene clusters named eps1 and eps2, three isolated glycoside-hydrolase genes named dsrO, dsrV and levO, and three isolated glycosyltransferase genes named gtf, it3, it4. The isolated genes were present or absent depending on the strain and the eps gene clusters composition diverged from one strain to another. The soluble and capsular EPS production capacity of several strains was examined after growth in different culture media and the EPS structure was determined. Genotype to phenotype correlations showed that several EPS biosynthetic pathways were active and complementary in O. oeni. Can be distinguished: (i) a Wzy-dependent synthetic pathway, allowing the production of heteropolysaccharides made of glucose, galactose and rhamnose, mainly in a capsular form, (ii) a glucan synthase pathway (Gtf), involved in β-glucan synthesis in a free and a cell-associated form, giving a ropy phenotype to growth media and (iii) homopolysaccharide synthesis from sucrose (α-glucan or β-fructan) by glycoside-hydrolases of the GH70 and GH68 families. The eps gene distribution on the phylogenetic tree was examined. Fifty out of 50 studied genomes possessed several genes dedicated to EPS metabolism. This suggests that these polymers are important for the adaptation of O. oeni to its specific ecological niche, wine and possibly contribute to the technological performance of malolactic starters.

Indexed as

Genes, BacterialGenotypePhenotypeBiosynthetic PathwaysChromosome MappingChromosomes, BacterialGene OrderGenetic LociGenomicsMultigene FamilyOenococcusPhylogenyPolysaccharides, BacterialPolysaccharides, Bacterial

Identifiers

PMID24901216
PMCPMC4047060
OpenAlexW2045386783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.