Evidence map›Paper›PMID 24899362›Full record

ArticleChemical biology & drug design2014

Site-specific labeling of proteins and peptides with trans-cyclooctene containing handles capable of tetrazine ligation.

James W Wollack, Benjamin J Monson, Jonathan K Dozier, Joseph J Dalluge, Kristina Poss, Scott A Hilderbrand, Mark D Distefano

Abstract read
In one paragraph

Article in Chemical biology & drug design, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Promiscuous Enzymes for Residue-Specific Peptide and Protein Late-Stage Functionalization.Chembiochem : a European journal of chemical biology · 2023
    Review
  8. Article
  9. Review
  10. Flow Photochemical Syntheses ofIsrael journal of chemistry · 2020
    Article
  11. Review
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

James W WollackDepartment of Chemistry and Biochemistry, St. Catherine University, 2004 Randolph Avenue, Saint Paul, MN, 55105, USA.
Benjamin J Monson
Jonathan K Dozier
Joseph J Dalluge
Kristina Poss
Scott A Hilderbrand
Mark D Distefano

Funding

Chemistry-Biology Interface Training GrantT32GM008700 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1999 to 2018
$4.0M
MECHANISM AND FUNCTION OF PROTEIN PRENYLATIONR01GM058842 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1998 to 2010
$2.6M
Enzymatic Protein LabelingR01GM084152 · NIGMS · UNIVERSITY OF MINNESOTA · PI DISTEFANO, MARK D · 2010 to 2019
$2.6M
Negative Regulators: Key Determinants in CarcinogenesisR01CA104609 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WATTENBERG, ELIZABETH V. · 2005 to 2009
$1.1M
NCI NIH HHS CA104609NCI NIH HHS R01 CA104609NIGMS NIH HHS GM058842NIGMS NIH HHS GM084152NIGMS NIH HHS R01 GM058842NIGMS NIH HHS R01 GM084152NIGMS NIH HHS T32 GM008700PHS HHS P30A77598PHS HHS T32M008347
6 · The paper itself

Abstract

There is a growing library of functionalized non-natural substrates for the enzyme protein farnesyltransferase (PFTase). PFTase covalently attaches these functionalized non-natural substrates to proteins ending in the sequence CAAX, where C is a cysteine that becomes alkylated, A represents an aliphatic amino acid, and X is Ser, Met, Ala, or Gln. Reported substrates include a variety of functionalities that allow modified proteins to undergo subsequent bioconjugation reactions. To date the most common strategy used in this approach has been copper catalyzed azide-alkyne cycloaddition (CuAAC). While being fast and bioorthogonal CuAAC has limited use in live cell experiments due to copper's toxicity.(1) Here, we report the synthesis of trans-cyclooctene geranyl diphosphate. This substrate can be synthesized from geraniol in six steps and be enzymatically transferred to peptides and proteins that end in a CAAX sequence. Proteins and peptides site-specially modified with trans-cyclooctene geranyl diphosphate were subsequently targeted for further modification via tetrazine ligation. As tetrazine ligation is bioorthogonal, fast, and is contingent on ring strain rather than the addition of a copper catalyst, this labeling strategy should prove useful for labeling proteins where the presence of copper may hinder solubility or biological reactivity.

Indexed as

Alkyl and Aryl TransferasesAmino Acid SequenceCyclooctanesDiphosphatesDiterpenesPeptidesProtein PrenylationProteinsRecombinant ProteinsSubstrate SpecificityAlkyl and Aryl TransferasesCyclooctanesDiphosphatesDiterpenesgeranyl diphosphatep21(ras) farnesyl-protein transferasePeptidesProteinsRecombinant Proteinsbioorthogonalinverse-electron-demand Diels-Alderprotein farnesyltransferaseprotein prenylationtetrazine ligationtrans-cyclooctene

Identifiers

PMID24899362
PMCPMC4107141

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.