Evidence map›Paper›PMID 24899057›Full record

ArticleAmerican journal of physiology. Renal physiology2014

Tissue-specific regulation of the mouse Pkhd1 (ARPKD) gene promoter.

Scott S Williams, Patricia Cobo-Stark, Sachin Hajarnis, Karam Aboudehen, Xinli Shao, James A Richardson, Vishal Patel, Peter Igarashi

Open access · greenAbstract readComparative Study
In one paragraph

Article in American journal of physiology. Renal physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

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  11. Review
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  14. New insights into the role of HNF-1β in kidney (patho)physiology.Pediatric nephrology (Berlin, Germany) · 2019
    Review
  15. Mechanism of Fibrosis inJournal of the American Society of Nephrology : JASN · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Hepatocyte Nuclear Factor-1Journal of the American Society of Nephrology : JASN · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Scott S WilliamsDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas;
Patricia Cobo-StarkDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas;
Sachin HajarnisDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas;
Karam AboudehenDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas;
Xinli ShaoDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas;
James A RichardsonDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, Texas; and Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, Texas.
Vishal PatelDepartment of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas;
Peter IgarashiDepartment of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas; Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas; peter.igarashi@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · US

Funding

UT Southwestern O'Brien Kidney Research Core CenterP30DK079328 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI MOE, ORSON W · 2007 to 2021
$16.9M
REGULATION OF RENAL NA+/H+ EXCHANGER GENE EXPRESSIONR01DK042921 · NIDDK · YALE UNIVERSITY · PI IGARASHI, PETER · 1991 to 2025
$5.1M
RENAL CONTROL OF BODY COMPOSITION AND BLOOD PRESSURET32DK007257 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI BAUM, MICHEL GERARD, MOE, ORSON W · 1986 to 2021
$5.0M
Regulation of Kidney-Specific Gene ExpressionR37DK042921 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI IGARASHI, PETER · 2011 to 2020
$3.6M
Role of microRNA in kidney development and pathogenesis of PKDK08DK084311 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI PATEL, VISHAL · 2009 to 2013
$728k
NIDDK NIH HHS K08 DK 084311NIDDK NIH HHS P30 DK 079328NIDDK NIH HHS P30 DK079328NIDDK NIH HHS R01 DK042921NIDDK NIH HHS R37 DK 042921NIDDK NIH HHS R37 DK042921NIDDK NIH HHS T32 DK 007257NIDDK NIH HHS T32 DK007257
6 · The paper itself

Abstract

Autosomal recessive polycystic kidney disease, an inherited disorder characterized by the formation of cysts in renal collecting ducts and biliary dysgenesis, is caused by mutations of the polycystic kidney and hepatic disease 1 (PKHD1) gene. Expression of PKHD1 is tissue specific and developmentally regulated. Here, we show that a 2.0-kb genomic fragment containing the proximal promoter of mouse Pkhd1 directs tissue-specific expression of a lacZ reporter gene in transgenic mice. LacZ is expressed in renal collecting ducts beginning during embryonic development but is not expressed in extrarenal tissues. The Pkhd1 promoter contains a binding site for the transcription factor hepatocyte nuclear factor (HNF)-1β, which is required for activity in transfected cells. Mutation of the HNF-1β-binding site abolishes the expression of the lacZ reporter gene in renal collecting ducts. Transgenes containing the 2.0-kb promoter and 2.7 kb of additional genomic sequence extending downstream to the second exon are expressed in the kidney, intrahepatic bile ducts, and male reproductive tract. This pattern overlaps with the endogenous expression of Pkhd1 and coincides with sites of expression of HNF-1β. We conclude that the proximal 2.0-kb promoter is sufficient for tissue-specific expression of Pkhd1 in renal collecting ducts in vivo and that HNF-1β is required for Pkhd1 promoter activity in collecting ducts. Additional genomic sequences located from exons 1-2 or elsewhere in the gene locus are required for expression in extrarenal tissues.

Indexed as

AnimalsBiliary TractCells, CulturedEpithelial CellsHepatocyte Nuclear Factor 1-betaKidney Tubules, CollectingMaleMiceMice, Inbred C57BLMice, TransgenicMutationPolycystic Kidney, Autosomal RecessivePromoter Regions, GeneticReceptors, Cell SurfaceUrogenital SystemHepatocyte Nuclear Factor 1-betaPkhd1 protein, mouseReceptors, Cell Surfaceautosomal recessive polycystic kidney diseasefibrocystingene transcriptionpolycystic kidney and hepatic disease 1polycystic kidney diseasetranscription factortransgenic mice

Identifiers

PMID24899057
PMCPMC4121570
OpenAlexW2054054959

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.