Evidence map›Paper›PMID 24898692›Full record

ArticleScientific reports2014

ATP binding turns plant cryptochrome into an efficient natural photoswitch.

Pavel Müller, Jean-Pierre Bouly, Kenichi Hitomi, Véronique Balland, Elizabeth D Getzoff, Thorsten Ritz, Klaus Brettel

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
16.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 94 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Balance between photoreduction efficiency, cofactor affinity, and allosteric coupling of halogenase flavoenzymes.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2025
    Article
  6. Article
  7. Article
  8. A structural decryption of cryptochromes.Frontiers in chemistry · 2024
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Open hardware microsecond dispersive transient absorption spectrometer for linear optical response.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  14. Article
  15. Cryptochromes: Photochemical and structural insight into magnetoreception.Protein science : a publication of the Protein Society · 2021
    Review
  16. Investigation of the pH-dependence of the oxidation of FAD in VcCRY-1, a member of the cryptochrome-DASH family.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Article
  17. Ultrafast photoreduction dynamics of a new class of CPD photolyases.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Article
  18. Article
  19. Identification of the vibrational marker of tyrosine cation radical using ultrafast transient infrared spectroscopy of flavoprotein systems.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Pavel Müller1] UMR-8221, CEA-Institut de Biologie et de Technologie de Saclay, CNRS, Université Paris Sud, 91191 Gif-sur-Yvette, France [2] UR 5, Physiologie Cellulaire et Moléculaire des Plantes, Université Pierre et Marie Curie, CNRS, 75005 Paris 6, France.
Jean-Pierre Bouly1] UR 5, Physiologie Cellulaire et Moléculaire des Plantes, Université Pierre et Marie Curie, CNRS, 75005 Paris 6, France [2] Department of Physics and Astronomy, University of California, Irvine, California 92697, USA [3].
Kenichi Hitomi1] Department of Integrative Structural and Computational Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA [2].
Véronique BallandUMR CNRS 7591, Laboratoire d'Electrochimie Moléculaire, Université Paris Diderot, Sorbonne Paris Cité, 75205 Paris 13, France.
Elizabeth D GetzoffDepartment of Integrative Structural and Computational Biology and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Thorsten RitzDepartment of Physics and Astronomy, University of California, Irvine, California 92697, USA.
Klaus BrettelUMR-8221, CEA-Institut de Biologie et de Technologie de Saclay, CNRS, Université Paris Sud, 91191 Gif-sur-Yvette, France.
Scripps Research Institute · USCEA Paris-Saclay · FRIrvine University · USSystèmes Membranaires, Photobiologie, Stress et Détoxication · FRUniversité Paris Cité · FRUniversity of California, Irvine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptochromes are flavoproteins that drive diverse developmental light-responses in plants and participate in the circadian clock in animals. Plant cryptochromes have found application as photoswitches in optogenetics. We have studied effects of pH and ATP on the functionally relevant photoreduction of the oxidized FAD cofactor to the semi-reduced FADH(·) radical in isolated Arabidopsis cryptochrome 1 by transient absorption spectroscopy on nanosecond to millisecond timescales. In the absence of ATP, the yield of light-induced radicals strongly decreased with increasing pH from 6.5 to 8.5. With ATP present, these yields were significantly higher and virtually pH-independent up to pH 9. Analysis of our data in light of the crystallographic structure suggests that ATP-binding shifts the pKa of aspartic acid D396, the putative proton donor to FAD·(-), from ~7.4 to >9, and favours a reaction pathway yielding long-lived aspartate D396(-). Its negative charge could trigger conformational changes necessary for signal transduction.

Indexed as

LightAdenosine TriphosphateAlgorithmsArabidopsisArabidopsis ProteinsCryptochromesOxidation-ReductionProtein ConformationQuantum TheorySignal TransductionSpectrophotometry, UltravioletAdenosine TriphosphateArabidopsis ProteinsCryptochromes

Identifiers

PMID24898692
PMCPMC4046262
OpenAlexW2153834186

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.