Evidence map›Paper›PMID 24897020›Full record

ArticleInternational journal of molecular sciences2014

Genetic variants in human leukocyte antigen-DP influence both hepatitis C virus persistence and hepatitis C virus F protein generation in the Chinese Han population.

Xiaodong Xu, Ming Yue, Longfeng Jiang, Xiaozhao Deng, Yongxiang Zhang, Yun Zhang, Danyan Zhu, Wen Xiao, Zhenxian Zhou, Wenjuan Yao and 3 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Influence of IFNL3 and HLA-DPB1 genotype on postpartum control of hepatitis C virus replication and T-cell recovery.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  6. TBX21 polymorphisms are associated with virus persistence in hepatitis C virus infection patients from a high-risk Chinese population.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Xiaodong XuDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Nanjing Medical University, Nanjing 210029, China. dongxiaoxuok@163.com.
Ming YueSchool of Life Science and Technology, China Pharmaceutical University, Nanjing 210009, China. njym08@163.com.
Longfeng JiangDepartment of Infectious Diseases, the First Affiliated Hospital with Nanjing Medical University, Nanjing 210029, China. phoenix@126.com.
Xiaozhao DengDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Nanjing Medical University, Nanjing 210029, China. dengxiaozhao1002@vip.sina.com.
Yongxiang ZhangDepartment of Infectious Diseases, the First Affiliated Hospital with Nanjing Medical University, Nanjing 210029, China. zyx3019@163.com.
Yun ZhangInstitute of Disease Control and Prevention, Huadong Research Institute for Medicine and Biotechnics, Nanjing 210002, China. liuxiaolinok914@126.com.
Danyan ZhuDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Nanjing Medical University, Nanjing 210029, China. zhudanyan1907@126.com.
Wen XiaoSchool of Life Science and Technology, China Pharmaceutical University, Nanjing 210009, China. xiaowen2013cpu@163.com.
Zhenxian ZhouDepartment of Clinical Laboratory, Nanjing Second Hospital, Nanjing 210003, China. zzx0417@126.com.
Wenjuan YaoDepartment of Pharmacology, Nantong University Medical College, Nantong 226019, China. juanwenyy@ntu.edu.cn.
Jing KongSchool of Life Science and Chemical Engineering, Huaiyin Institute of Technology, Huaian 223003, China. cpukj@163.com.
Xiaojie YuDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Nanjing Medical University, Nanjing 210029, China. yuxiaojie0903@126.com.
Juan WeiDepartment of Biochemistry and Molecular Biology, School of Basic Medicine, Nanjing Medical University, Nanjing 210029, China. juanwei_315@163.com.
Nanjing Medical University · CNChina Pharmaceutical University · CNHuaiyin Institute of Technology · CNNanjing General Hospital of Nanjing Military Command · CNNanjing Second Hospital · CNNantong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chronic hepatitis C is a serious liver disease that often results in cirrhosis or hepatocellular carcinoma. The aim of this study was to assess the association of human leukocyte antigen-DP (HLA-DP) variants with risk of chronic hepatitis C virus (HCV) or anti-F antibody generation. We selected two single nucleotide polymorphisms (SNPs) in a region including HLA-DPA1 (rs3077) and HLA-DPB1 (rs9277534) and genotyped SNPs in 702 cases and 342 healthy controls from the Chinese population using TaqMan SNP genotyping assay. Moreover, the exon 2 of the HLA-DPA1 and HLA-DPB1 genes were amplified and determined by sequencing-based typing (SBT). The results showed that rs3077 significantly increased the risk of chronic HCV infection in additive models and dominant models (odds ratio (OR) = 1.32 and 1.53). The rs3077 also contributed to decrease the risk of anti-F antibody generation in additive models and dominant models (OR = 0.46 and 0.56). Subsequent analyses revealed the risk haplotypes (DPA1*0103-DPB1*0501 and DPA1*0103-DPB1*0201) and protective haplotypes (DPA1*0202-DPB1*0501 and DPA1*0202-DPB1*0202) to chronic HCV infection. Moreover, we also found that the haplotype of DPA1*0103-DPB1*0201 and DPA1*0202-DPB1*0202 were associated with the anti-F antibody generation. Our findings show that genetic variants in HLA-DP gene are associated with chronic HCV infection and anti-F antibody generation.

Indexed as

Polymorphism, Single NucleotideAgedAntibodies, ViralChinaFemaleGenetic VariationGenotypeHaplotypesHepacivirusHepatitis C, ChronicHLA-DP alpha-ChainsHLA-DP beta-ChainsHumansMaleMiddle AgedRisk FactorsAntibodies, ViralHLA-DPA1 antigenHLA-DP alpha-ChainsHLA-DPB1 antigenHLA-DP beta-ChainsViral Proteins

Identifiers

PMID24897020
PMCPMC4100124
OpenAlexW2070307636

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.