Evidence map›Paper›PMID 24896186›Full record

ArticleNature2014

Novel somatic and germline mutations in intracranial germ cell tumours.

Linghua Wang, Shigeru Yamaguchi, Matthew D Burstein, Keita Terashima, Kyle Chang, Ho-Keung Ng, Hideo Nakamura, Zongxiao He, Harshavardhan Doddapaneni, Lora Lewis and 16 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed, 2 pooled it
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 2 syntheses or guidelines pooled it, 223 citations in OpenAlex.

  1. Guideline
  2. A Systematic Literature Review of Whole Exome and Genome Sequencing Population Studies of Genetic Susceptibility to Cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Pooled it
  3. Overlapping genetic etiology of pediatric and adult germ cell tumors.Journal of the National Cancer Institute · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Long-term trends and disparities in primary intracranial germ cell tumor incidence and mortality for child and adolescent in the USA.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2025
    Article
  12. Article
  13. Germ cell tumors in children.Virchows Archiv : an international journal of pathology · 2025
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Update on Cancer Predisposition Syndromes and Surveillance Guidelines for Childhood Brain Tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Review

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 3 countries.

Linghua WangHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Shigeru YamaguchiTexas Children's Cancer and Hematology Centers, Baylor College of Medicine, Houston, Texas 77030, USA.
Matthew D Burstein1] Structural and Computational Biology and Molecular Biophysics Program, Baylor College of Medicine, Houston, Texas 77030, USA [2] Medical Scientist Training Program, Baylor College of Medicine, Houston, Texas 77030, USA.
Keita Terashima1] Texas Children's Cancer and Hematology Centers, Baylor College of Medicine, Houston, Texas 77030, USA [2] National Center for Child Health and Development, Tokyo, 157-8535, Japan.
Kyle ChangHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Ho-Keung NgDepartment of Anatomical and Cellular Pathology, Prince of Wales Hospital, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
Hideo NakamuraDepartment of Neurosurgery, Kumamoto University, Kumamoto, 860-0862, Japan.
Zongxiao HeCenter for Statistical Genetics, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Harshavardhan DoddapaneniHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Lora LewisHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Mark WangHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Tomonari SuzukiDepartment of Neurosurgery, Saitama Medical University, Saitama, 350-0495, Japan.
Ryo NishikawaDepartment of Neurosurgery, Saitama Medical University, Saitama, 350-0495, Japan.
Atsushi NatsumeDepartment of Neurosurgery, Nagoya University, Nagoya, 466-8550, Japan.
Shunsuke TerasakaDepartment of Neurosurgery, Hokkaido University, Hokkaido Prefecture, 060-0808, Japan.
Robert DauserDepartment of Neurosurgery, Baylor College of Medicine, Houston, Texas 77030, USA.
William WhiteheadDepartment of Neurosurgery, Baylor College of Medicine, Houston, Texas 77030, USA.
Adesina AdekunleDepartment of Pathology, Baylor College of Medicine, Houston, Texas 77030, USA.
Jiayi SunMedical Scientist Training Program, Baylor College of Medicine, Houston, Texas 77030, USA.
Yi QiaoDepartment of Biology, Boston College, Chestnut Hill, Maryland 02467, USA.
Gábor MarthDepartment of Biology, Boston College, Chestnut Hill, Maryland 02467, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Suzanne M LealCenter for Statistical Genetics, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
David A WheelerHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Ching C Lau1] Texas Children's Cancer and Hematology Centers, Baylor College of Medicine, Houston, Texas 77030, USA [2] Medical Scientist Training Program, Baylor College of Medicine, Houston, Texas 77030, USA [3] Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA.
Baylor College of Medicine · USBoston College · USSaitama Medical University · JPBaylor Genetics · USChildren's Cancer Center · USChinese University of Hong Kong · CNHokkaido University · JPKumamoto University · JPNagoya University · JP

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
NHGRI NIH HHS 5U54HG003273NHGRI NIH HHS U54 HG003273NLM NIH HHS 5T15 LM07093-18NLM NIH HHS 5T15 LM07093-19NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

Intracranial germ cell tumours (IGCTs) are a group of rare heterogeneous brain tumours that are clinically and histologically similar to the more common gonadal GCTs. IGCTs show great variation in their geographical and gender distribution, histological composition and treatment outcomes. The incidence of IGCTs is historically five- to eightfold greater in Japan and other East Asian countries than in Western countries, with peak incidence near the time of puberty. About half of the tumours are located in the pineal region. The male-to-female incidence ratio is approximately 3-4:1 overall, but is even higher for tumours located in the pineal region. Owing to the scarcity of tumour specimens available for research, little is currently known about this rare disease. Here we report the analysis of 62 cases by next-generation sequencing, single nucleotide polymorphism array and expression array. We find the KIT/RAS signalling pathway frequently mutated in more than 50% of IGCTs, including novel recurrent somatic mutations in KIT, its downstream mediators KRAS and NRAS, and its negative regulator CBL. Novel somatic alterations in the AKT/mTOR pathway included copy number gains of the AKT1 locus at 14q32.33 in 19% of patients, with corresponding upregulation of AKT1 expression. We identified loss-of-function mutations in BCORL1, a transcriptional co-repressor and tumour suppressor. We report significant enrichment of novel and rare germline variants in JMJD1C, which codes for a histone demethylase and is a coactivator of the androgen receptor, among Japanese IGCT patients. This study establishes a molecular foundation for understanding the biology of IGCTs and suggests potentially promising therapeutic strategies focusing on the inhibition of KIT/RAS activation and the AKT1/mTOR pathway.

Indexed as

AdultBrain NeoplasmsChildFemaleGerm-Line MutationHumansJapanMaleMutationNeoplasms, Germ Cell and EmbryonalOncogene Protein v-aktProto-Oncogene Proteins c-kitras ProteinsReproducibility of ResultsSignal TransductionTOR Serine-Threonine KinasesOncogene Protein v-aktProto-Oncogene Proteins c-kitras ProteinsTOR Serine-Threonine Kinases

Identifiers

PMID24896186
PMCPMC4532372
OpenAlexW1969812030

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.