Evidence map›Paper›PMID 24894100›Full record

ArticleJournal of visualized experiments : JoVE2014

Assessing phagocytic clearance of cell death in experimental stroke by ligatable fluorescent probes.

Candace L Minchew, Vladimir V Didenko

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Express FRET Labeling and Analysis of Phagocytic Clearance.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  3. Quick Detection of DNase II-Type Breaks in Formalin-Fixed Tissue Sections.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Candace L MinchewBaylor College of Medicine; Michael E. DeBakey Veterans Affairs Medical Center.
Vladimir V DidenkoBaylor College of Medicine; Michael E. DeBakey Veterans Affairs Medical Center; vdidenko@bcm.edu.
Baylor College of Medicine · USMichael E. DeBakey VA Medical Center · US

Funding

Ligatable fluorescent probes using energy transfer for apoptosis detectionR01NS062842 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI DIDENKO, VLADIMIR V · 2009 to 2012
$994k
Semi-artificial nanomachines for detection of DNA damage and apoptosisR21EB006301 · NIBIB · BAYLOR COLLEGE OF MEDICINE · PI DIDENKO, VLADIMIR V · 2006 to 2008
$487k
Assay for dual detection of apoptosisR21NS064403 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI DIDENKO, VLADIMIR V · 2009 to 2010
$409k
NIBIB NIH HHS R21 EB006301NINDS NIH HHS R01 NS062842NINDS NIH HHS R01NS062842NINDS NIH HHS R21 NS064403
6 · The paper itself

Abstract

We describe a new histochemical approach for visualization of phagocytic clearance in focal brain ischemia. The approach permits the study of elimination of dead cells in stroke by waste-management phagocytes of any cellular lineage. Although numerous cells of different origins that are capable of phagocytosis are present in ischemic brain, only part of them actively engulf and digest cell corpses. The selective visualization, quantification and analysis of such active phagocytic waste-management are helpful in assessing brain response to ischemia. Efficient cell death clearance is important for brain recovery from ischemic injury, as it opens the way for the subsequent regenerative processes. The failure to clean the corpses would result in a toxic reaction caused by non-degraded DNA and proteins. The described procedure uses fluorescent probes selectively ligated by a viral topoisomerase to characteristic DNA breaks produced in all phagocytes during engulfment and digestion of cells irreversibly damaged by ischemia. The method is a new tool for the investigation of brain reaction to ischemic injury.

Indexed as

DNA BreaksAnimalsBrainBrain IschemiaCell DeathDisease Models, AnimalFluorescent DyesHistocytochemistryOligonucleotide ProbesPhagocytosisRatsStrokeFluorescent DyesOligonucleotide Probes

Identifiers

PMID24894100
PMCPMC4207364
OpenAlexW2127348758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.