Evidence map›Paper›PMID 24893046›Full record

ArticlePloS one2014

The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization.

Paula Ramos-Silva, Jaap Kaandorp, Frédéric Herbst, Laurent Plasseraud, Gérard Alcaraz, Christine Stern, Marion Corneillat, Nathalie Guichard, Christophe Durlet, Gilles Luquet and 1 more

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The spatial network of skeletal proteins in a stony coral.Journal of the Royal Society, Interface · 2021
    Article
  6. How corals made rocks through the ages.Global change biology · 2020
    Review
  7. Genomic Variants Among ThreatenedG3 (Bethesda, Md.) · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Elevated COScientific reports · 2018
    Article
  13. In-depth proteomic analyses ofProteome science · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Paula Ramos-SilvaUMR 6282 Biogéosciences, Université de Bourgogne, Dijon, France; Section Computational Science, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.
Jaap KaandorpSection Computational Science, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.
Frédéric HerbstUMR 5209, Université de Bourgogne, Dijon, France.
Laurent PlasseraudUMR 6302, Institut de Chimie Moléculaire, Université de Bourgogne, Dijon, France.
Gérard AlcarazUMR 1347, Agroécologie INRA, Université de Bourgogne, AgroSup Dijon, Pôle Mécanisme & Gestion Interactions Plantes Micro-organismes, ERL 6300, Dijon, France.
Christine SternUMR 6302, Institut de Chimie Moléculaire, Université de Bourgogne, Dijon, France.
Marion CorneillatUMR 1347, Agroécologie INRA, Université de Bourgogne, AgroSup Dijon, Pôle Mécanisme & Gestion Interactions Plantes Micro-organismes, ERL 6300, Dijon, France.
Nathalie GuichardUMR 6282 Biogéosciences, Université de Bourgogne, Dijon, France.
Christophe DurletUMR 6282 Biogéosciences, Université de Bourgogne, Dijon, France.
Gilles LuquetUMR 6282 Biogéosciences, Université de Bourgogne, Dijon, France; UMR 7245, Muséum National d'Histoire Naturelle, Paris, France.
Frédéric MarinUMR 6282 Biogéosciences, Université de Bourgogne, Dijon, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The scleractinian coral Acropora millepora is one of the most studied species from the Great Barrier Reef. This species has been used to understand evolutionary, immune and developmental processes in cnidarians. It has also been subject of several ecological studies in order to elucidate reef responses to environmental changes such as temperature rise and ocean acidification (OA). In these contexts, several nucleic acid resources were made available. When combined to a recent proteomic analysis of the coral skeletal organic matrix (SOM), they enabled the identification of several skeletal matrix proteins, making A. millepora into an emerging model for biomineralization studies. Here we describe the skeletal microstructure of A. millepora skeleton, together with a functional and biochemical characterization of its occluded SOM that focuses on the protein and saccharidic moieties. The skeletal matrix proteins show a large range of isoelectric points, compositional patterns and signatures. Besides secreted proteins, there are a significant number of proteins with membrane attachment sites such as transmembrane domains and GPI anchors as well as proteins with integrin binding sites. These features show that the skeletal proteins must have strong adhesion properties in order to function in the calcifying space. Moreover this data suggest a molecular connection between the calcifying epithelium and the skeletal tissue during biocalcification. In terms of sugar moieties, the enrichment of the SOM in arabinose is striking, and the monosaccharide composition exhibits the same signature as that of mucus of acroporid corals. Finally, we observe that the interaction of the acetic acid soluble SOM on the morphology of in vitro grown CaCO3 crystals is very pronounced when compared with the calcifying matrices of some mollusks. In light of these results, we wish to commend Acropora millepora as a model for biocalcification studies in scleractinians, from molecular and structural viewpoints.

Indexed as

Acetic AcidAminationAnimalsAnthozoaBone and BonesCalcium CarbonateCrystallizationGelsMonosaccharidesProteinsSolubilitySpectroscopy, Fourier Transform InfraredSpectrum Analysis, RamanAcetic AcidCalcium CarbonateGelsMonosaccharidesProteins

Identifiers

PMID24893046
PMCPMC4043741

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.