Evidence map›Paper›PMID 24893005›Full record

ArticlePloS one2014

A major locus for chloride accumulation on chromosome 5A in bread wheat.

Yusuf Genc, Julian Taylor, Jay Rongala, Klaus Oldach

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Meta-QTL analysis in wheat: progress, challenges and opportunities.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Review
  3. Review
  4. Article
  5. Article
  6. Genetic networks underlying salinity tolerance in wheat uncovered with genome-wide analyses and selective sweeps.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  7. Article
  8. Article
  9. Capturing Wheat Phenotypes at the Genome Level.Frontiers in plant science · 2022
    Review
  10. Meta-QTLs, ortho-MQTLs and candidate genes for the traits contributing to salinity stress tolerance in common wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  11. Article
  12. Article
  13. Frontiers in plant science · 2016
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yusuf GencSchool of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, South Australia, Australia; South Australian Research and Development Institute, Plant Genomics Centre, Waite Campus, Glen Osmond, South Australia, Australia.
Julian TaylorSchool of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, South Australia, Australia.
Jay RongalaSouth Australian Research and Development Institute, Plant Genomics Centre, Waite Campus, Glen Osmond, South Australia, Australia.
Klaus OldachSchool of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, South Australia, Australia; South Australian Research and Development Institute, Plant Genomics Centre, Waite Campus, Glen Osmond, South Australia, Australia.
South Australian Research and Development Institute · AUUniversity of Adelaide · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chloride (Cl-) is an essential micronutrient for plant growth, but can be toxic at high concentrations resulting in reduced growth and yield. Although saline soils are generally dominated by both sodium (Na+) and Cl- ions, compared to Na+ toxicity, very little is known about physiological and genetic control mechanisms of tolerance to Cl- toxicity. In hydroponics and field studies, a bread wheat mapping population was tested to examine the relationships between physiological traits [Na+, potassium (K+) and Cl- concentration] involved in salinity tolerance (ST) and seedling growth or grain yield, and to elucidate the genetic control mechanism of plant Cl- accumulation using a quantitative trait loci (QTL) analysis approach. Plant Na+ or Cl- concentration were moderately correlated (genetically) with seedling biomass in hydroponics, but showed no correlations with grain yield in the field, indicating little value in selecting for ion concentration to improve ST. In accordance with phenotypic responses, QTL controlling Cl- accumulation differed entirely between hydroponics and field locations, and few were detected in two or more environments, demonstrating substantial QTL-by-environment interactions. The presence of several QTL for Cl- concentration indicated that uptake and accumulation was a polygenic trait. A major Cl- concentration QTL (5A; barc56/gwm186) was identified in three field environments, and accounted for 27-32% of the total genetic variance. Alignment between the 5A QTL interval and its corresponding physical genome regions in wheat and other grasses has enabled the search for candidate genes involved in Cl- transport, which is discussed.

Indexed as

Chromosomes, PlantQuantitative Trait, HeritableQuantitative Trait LociBiomassChloridesChromosome MappingGenetic LinkageIonsPhenotypeSalinitySodium Chloride SymportersStress, PhysiologicalTriticumChloridesIonsSodium Chloride Symporters

Identifiers

PMID24893005
PMCPMC4043771
OpenAlexW1991864495

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.