Evidence map›Paper›PMID 24892739›Full record

ArticlePloS one2014

In depth analysis of the Helicobacter pylori cag pathogenicity island transcriptional responses.

Andrea Vannini, Davide Roncarati, Marco Spinsanti, Vincenzo Scarlato, Alberto Danielli

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Frontiers in cellular and infection microbiology · 2024
    Article
  3. Article
  4. Insights into the Orchestration of Gene Transcription Regulators inInternational journal of molecular sciences · 2022
    Review
  5. Article
  6. Riboregulation in the Major Gastric PathogenFrontiers in microbiology · 2021
    Review
  7. Article
  8. Article
  9. Prevalence of CagA and antimicrobial sensitivity ofInfectious agents and cancer · 2018
    Article
  10. TheFrontiers in microbiology · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Helicobacter pylori with East Asian-type cagPAI genes is more virulent than strains with Western-type in some cagPAI genes.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrea VanniniDepartment of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy.
Davide RoncaratiDepartment of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy.
Marco SpinsantiDepartment of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy.
Vincenzo ScarlatoDepartment of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy.
Alberto DanielliDepartment of Pharmacy and Biotechnology (FaBiT), University of Bologna, Bologna, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The severity of symptoms elicited by the widespread human pathogen Helicobacter pylori is strongly influenced by the genetic diversity of the infecting strain. Among the most important pathogen factors that carry an increased risk for gastric cancer are specific genotypes of the cag pathogenicity island (cag-PAI), encoding a type IV secretion system (T4SS) responsible for the translocation of the CagA effector oncoprotein. To date, little is known about the regulatory events important for the expression of a functional cag-T4SS. Here we demonstrate that the cag-PAI cistrons are subjected to a complex network of direct and indirect transcriptional regulations. We show that promoters of cag operons encoding structural T4SS components display homogeneous transcript levels, while promoters of cag operons encoding accessory factors vary considerably in their basal transcription levels and responses. Most cag promoters are transcriptionally responsive to growth-phase, pH and other stress-factors, although in many cases in a pleiotropic fashion. Interestingly, transcription from the Pcagζ promoter controlling the expression of transglycolase and T4SS stabilizing factors, is triggered by co-culture with a gastric cell line, providing an explanation for the increased formation of the secretion system observed upon bacterial contact with host cells. Finally, we demonstrate that the highly transcribed cagA oncogene is repressed by iron limitation through a direct apo-Fur regulation mechanism. Together the results shed light on regulatory aspects of the cag-PAI, which may be involved in relevant molecular and etiological aspects of H. pylori pathogenesis.

Indexed as

Transcription, GeneticAntigens, BacterialBacterial ProteinsBase SequenceCell Line, TumorEnvironmentGene Expression Regulation, BacterialGenes, ReporterGenomic IslandsHelicobacter pyloriHost-Pathogen InteractionsHumansHydrogen-Ion ConcentrationIronMolecular Sequence DataMutationAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriIron

Identifiers

PMID24892739
PMCPMC4043881

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.