Evidence map›Paper›PMID 24892559›Full record

ArticlePloS one2014

Genome-based discovery of a novel membrane-bound 1,6-dihydroxyphenazine prenyltransferase from a marine actinomycete.

Philipp Zeyhle, Judith S Bauer, Jörn Kalinowski, Kazuo Shin-ya, Harald Gross, Lutz Heide

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Bacterial terpenome.Natural product reports · 2021
    Review
  6. Isolation ofCommunications biology · 2019
    Article
  7. Article
  8. Draft Genome Sequence of the Xanthocidin-Producing StrainMicrobiology resource announcements · 2018
    Article
  9. Review
  10. Computational-guided discovery and characterization of a sesquiterpene synthase from Streptomyces clavuligerus.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Philipp ZeyhlePharmazeutische Biologie, Pharmazeutisches Institut, Eberhard Karls Universität Tübingen, Tübingen, Germany.
Judith S BauerPharmazeutische Biologie, Pharmazeutisches Institut, Eberhard Karls Universität Tübingen, Tübingen, Germany.
Jörn KalinowskiMicrobial Genomics and Biotechnology, Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
Kazuo Shin-yaBiomedical Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan.
Harald GrossPharmazeutische Biologie, Pharmazeutisches Institut, Eberhard Karls Universität Tübingen, Tübingen, Germany.
Lutz HeidePharmazeutische Biologie, Pharmazeutisches Institut, Eberhard Karls Universität Tübingen, Tübingen, Germany.
University of Tübingen · DEBielefeld University · DENational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recently, novel prenylated derivatives of 1,6-dihydroxyphenazine have been isolated from the marine sponge-associated Streptomyces sp. SpC080624SC-11. Genome sequencing of this strain now revealed a gene cluster containing all genes necessary for the synthesis of the phenazine and the isoprenoid moieties. Unexpectedly, however, the cluster did not contain a gene with similarity to previously investigated phenazine prenyltransferases, but instead a gene with modest similarity to the membrane-bound prenyltransferases of ubiquinone and menaquinone biosynthesis. Expression of this gene in E. coli and isolation of the membrane fraction proved that the encoded enzyme, Mpz10, catalyzes two successive prenylations of 1,6-dihydroxyphenazine. Mpz10 is the first example of a membrane-bound enzyme catalyzing the prenylation of a phenazine substrate, and one of few examples of membrane-bound enzymes involved in the prenylation of aromatic secondary metabolites in microorganisms.

Indexed as

Genome, BacterialActinobacteriaChromatography, High Pressure LiquidCloning, MolecularDimethylallyltranstransferaseEscherichia coliKineticsMass SpectrometryMultigene FamilyPhenazinesPrenylationRecombinant ProteinsSequence Analysis, DNASubstrate SpecificityDimethylallyltranstransferasePhenazinesRecombinant Proteins

Identifiers

PMID24892559
PMCPMC4044012
OpenAlexW1976720079

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.