Evidence map›Paper›PMID 24891238›Full record

ArticleeLife2014

Oxidation of cellular amino acid pools leads to cytotoxic mistranslation of the genetic code.

Tammy J Bullwinkle, Noah M Reynolds, Medha Raina, Adil Moghal, Eleftheria Matsa, Andrei Rajkovic, Huseyin Kayadibi, Farbod Fazlollahi, Christopher Ryan, Nathaniel Howitz and 3 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 84 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Perseverance of protein homeostasis despite mistranslation of glycine codons with alanine.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  9. Mutations identified in engineeredFrontiers in microbiology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Toxicity ofPlants (Basel, Switzerland) · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Aminoacyl-tRNA synthetases.RNA (New York, N.Y.) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Tammy J BullwinkleDepartment of Microbiology, Ohio State University, Columbus, United States.
Noah M ReynoldsDepartment of Microbiology, Ohio State University, Columbus, United States.
Medha RainaCenter for RNA Biology, Ohio State University, Columbus, United States.
Adil MoghalCenter for RNA Biology, Ohio State University, Columbus, United States.
Eleftheria MatsaDepartment of Microbiology, Ohio State University, Columbus, United States.
Andrei RajkovicCenter for RNA Biology, Ohio State University, Columbus, United States.
Huseyin KayadibiPasarow Mass Spectrometry Laboratory, Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, United States.
Farbod FazlollahiPasarow Mass Spectrometry Laboratory, Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, United States.
Christopher RyanPasarow Mass Spectrometry Laboratory, Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, United States.
Nathaniel HowitzDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, United States.
Kym F FaullPasarow Mass Spectrometry Laboratory, Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, United States.
Beth A LazazzeraDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, United States.
Michael IbbaDepartment of Microbiology, Ohio State University, Columbus, United States.
The Ohio State University · USSalk Institute for Biological Studies · USUniversity of California, Los Angeles · US

Funding

CHEMISTRY/BIOLOGY TRAINING GRANTT32GM008512 · NIGMS · OHIO STATE UNIVERSITY · PI PEI, DEHUA · 1996 to 2016
$3.9M
Cellular, molecular, and biochemical sciences training grantT32GM086252 · NIGMS · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH, MUSIER-FORSYTH, KARIN M · 2011 to 2020
$2.0M
NIGMS NIH HHS GM008512NIGMS NIH HHS GM086252NIGMS NIH HHS T32 GM008512NIGMS NIH HHS T32 GM086252
6 · The paper itself

Abstract

Aminoacyl-tRNA synthetases use a variety of mechanisms to ensure fidelity of the genetic code and ultimately select the correct amino acids to be used in protein synthesis. The physiological necessity of these quality control mechanisms in different environments remains unclear, as the cost vs benefit of accurate protein synthesis is difficult to predict. We show that in Escherichia coli, a non-coded amino acid produced through oxidative damage is a significant threat to the accuracy of protein synthesis and must be cleared by phenylalanine-tRNA synthetase in order to prevent cellular toxicity caused by mis-synthesized proteins. These findings demonstrate how stress can lead to the accumulation of non-canonical amino acids that must be excluded from the proteome in order to maintain cellular viability.

Indexed as

Genetic CodeAdenosine TriphosphateAmino AcidsAmino Acyl-tRNA SynthetasesEscherichia coliHydrolysisOxidative StressOxygenPhenylalanine-tRNA LigasePlasmidsProtein BiosynthesisProteinsProteomeRNA, Transfer, Amino AcylSaccharomyces cerevisiaeAdenosine TriphosphateAmino AcidsAmino Acyl-tRNA SynthetasesOxygenPhenylalanine-tRNA LigaseProteinsProteomeRNA, Transfer, Amino AcylbiochemistryE. coliinfectious diseasemicrobiologyprotein synthesisS. cerevisiaestresstranslation

Identifiers

PMID24891238
PMCPMC4066437
OpenAlexW2163209588

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.