Evidence map›Paper›PMID 24890414›Full record

ArticleMolecular oral microbiology2014

The Treponema denticola AtcR LytTR domain-containing response regulator interacts with three architecturally distinct promoter elements: implications for understanding the molecular signaling mechanisms that drive the progression of periodontal disease.

D P Miller, J R Frederick, J Sarkar, R T Marconi

Open access · greenAbstract read
In one paragraph

Article in Molecular oral microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
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  4. Conformational features of theBiochemistry and biophysics reports · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

D P MillerDepartment of Microbiology and Immunology, Virginia Commonwealth University Medical Center, Richmond, VA, USA.
J R Frederick
J Sarkar
R T Marconi
Virginia Commonwealth University Medical Center · US

Funding

Treponema denticola, complement regulatory proteins and periodontal diseaseR01DE017401 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MARCONI, RICHARD T · 2007 to 2011
$1.7M
Mechanisms of Complement Evasion by Treponema denticolaF31DE023000 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MILLER, DANIEL PATRICK · 2012 to 2013
$67k
NIDCR NIH HHS F31 DE023000NIDCR NIH HHS F31-DE023000NIDCR NIH HHS R01 DE017401NIDCR NIH HHS R01-DE017401
6 · The paper itself

Abstract

Treponema denticola is an oral spirochete and periopathogen that transitions from low abundance in healthy subgingival crevices to high abundance in periodontal pockets. The T. denticola response regulator AtcR harbors the relatively rare, LytTR DNA-binding domain. LytTR domain containing response regulators control critical transcriptional responses required for environmental adaptation. Using a multi-step bioinformatics approach, 26 strong lytTR recognition motifs were identified in the genome of T. denticola strain 35405. Electrophoretic mobility shift assays demonstrated that AtcR binds to these recognition motifs. High specificity-high affinity complexes formed with phosphorylated AtcR. The LytTR recognition sequences were found to exist in three distinct promoter architectures designated as LytTR1, LytTR2 and LytTR3 promoters. LytTR1 and LytTR2 promoters harbor σ(54) binding sites. The functional diversity of the proteins encoded by the putative AtcR regulon suggests that AtcR sits at the top of a regulatory cascade that plays a central role in facilitating T. denticola's ability to adapt to changing environmental conditions and thrive in periodontal pockets.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsBacteriological TechniquesComputational BiologyDisease ProgressionElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialGenome, BacterialHumansNucleotide MotifsPeriodontal DiseasesPromoter Regions, GeneticRegulatory Sequences, Nucleic AcidRegulonSequence Analysis, DNASigma FactorBacterial ProteinsSigma FactorTranscription FactorsdenticolaLytTRperiodontal diseasespirochetetreponema

Identifiers

PMID24890414
PMCPMC4165817
OpenAlexW2046178535

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.