Evidence map›Paper›PMID 24889227›Full record

ArticleVirology2014

Differential transcription of fathead minnow immune-related genes following infection with frog virus 3, an emerging pathogen of ectothermic vertebrates.

Kwang Cheng, B Lynn Escalon, Jacques Robert, V Gregory Chinchar, Natàlia Garcia-Reyero

Open access · greenAbstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Kwang ChengDepartment of Microbiology, University of Mississippi Medical Center, Jackson, MS 39211, USA.
B Lynn EscalonUS Army Corps of Engineers, Engineering Research and Development Center, Vicksburg, MS 39180, USA.
Jacques RobertDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY 14642, USA.
V Gregory ChincharDepartment of Microbiology, University of Mississippi Medical Center, Jackson, MS 39211, USA. Electronic address: vchinchar@umc.edu.
Natàlia Garcia-ReyeroInstitute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Starkville, MS 39759, USA.
Jackson Memorial Hospital · USBiocom · USUniversity of Rochester Medical Center · USU.S. Army Engineer Research and Development Center · US

Funding

A Xenopus Laevis Research Resource for ImmunologyR24AI059830 · NIAID · UNIVERSITY OF ROCHESTER · PI JACQUES Robert · 2004 to 2026
$7.7M
NIAID NIH HHS R24 AI059830NIAID NIH HHS R24-AI-059830
6 · The paper itself

Abstract

Frog virus 3 (FV3) and other ranaviruses are responsible for die-offs involving wild, farmed, and captive amphibians, fish, and reptiles. To ascertain which elements of the immune system respond to infection, we explored transcriptional responses following infection of fathead minnow cells with either wild type (wt) FV3 or a knock out (KO) mutant targeting the 18 kDa immediate early gene (18K). At 8h post infection we observed marked upregulation of multiple transcripts encoding proteins affecting innate and acquired immunity. Sequences expressed 4-fold or higher in wt-infected cells included transcripts encoding interferon (IFN), IFN regulatory factors (IRFs), IFN stimulated genes (ISGs) such as Mx and MHC class I, and interleukins IL-1β, IL-8, IL-17C and IL-12. Cells infected with the 18K KO mutant (∆18K) showed qualitative differences and lower levels of induction. Collectively, these results indicate that ranavirus infection induced expression of multiple cellular genes affecting both innate and acquired immunity.

Indexed as

Gene Expression ProfilingHost-Pathogen InteractionsTranscription, GeneticAnimalsCells, CulturedCyprinidaeRanavirus18K knock out mutantAnti-viral immunityFathead minnow cellsFHM microarrayFrog virus 3Immune-related genesInterferonIridovirusRanavirus

Identifiers

PMID24889227
PMCPMC4046121
OpenAlexW2162369712

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.