Evidence map›Paper›PMID 24887289›Full record

ArticleNeurosurgery2014

Analysis of Mll1 deficiency identifies neurogenic transcriptional modules and Brn4 as a factor for direct astrocyte-to-neuron reprogramming.

Matthew B Potts, Jason J Siu, James D Price, Ryan D Salinas, Mathew J Cho, Alexander D Ramos, Junghyun Hahn, Marta Margeta, Michael C Oldham, Daniel A Lim

Open access · greenAbstract read
In one paragraph

Article in Neurosurgery, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Research progress on incomplete partition type 3 inner ear malformation.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2024
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  10. Regulation of Adult Neurogenesis in Mammalian Brain.International journal of molecular sciences · 2020
    Review
  11. Invited Review: Epigenetics in neurodevelopment.Neuropathology and applied neurobiology · 2020
    Review
  12. Direct cell-fate conversion of somatic cells: Toward regenerative medicine and industries.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2020
    Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Matthew B Potts*Department of Neurological Surgery, ‡The Eli and Edythe Broad Institute of Regeneration Medicine and Stem Cell Research, §Department of Pathology, and ¶Department of Neurology University of California, San Francisco, San Francisco, California; and ‖Surgical Service, San Francisco Veterans Affairs Medical Center, San Francisco, California.
Jason J Siu
James D Price
Ryan D Salinas
Mathew J Cho
Alexander D Ramos
Junghyun Hahn
Marta Margeta
Michael C Oldham
Daniel A Lim
Broad Institute · US

Funding

Chromatin-based cellular memory in neural stem cellsDP2OD006505 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, DANIEL A · 2009 to 2009
$2.3M
Neuron-glia interactions in regulation of activity-dependent signaling pathwaysR01NS073765 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARGETA, MARTA · 2011 to 2015
$1.7M
The role of Dlx2 in driving neurogenesis in non-neurogenic cellsF32NS073173 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI POTTS, MATTHEW BRYAN · 2011 to 2011
$53k
Role of MLL Chromatin Remodeling Factor in Neural Stem CellsI01BX000252 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI DANIEL A LIM · 2009 to 2026
–
BLRD VA I01 BX000252NIH HHS DP2 OD006505NINDS NIH HHS F32 NS073173NINDS NIH HHS F32 NS073173)NINDS NIH HHS R01 NS073765NINDS NIH HHS R01-NS073765
6 · The paper itself

Abstract

backgroundMixed lineage leukemia-1 (Mll1) epigenetically regulates gene expression patterns that specify cellular identity in both embryonic development and adult stem cell populations. In the adult mouse brain, multipotent neural stem cells (NSCs) in the subventricular zone generate new neurons throughout life, and Mll1 is required for this postnatal neurogenesis but not for glial cell differentiation. Analysis of Mll1-dependent transcription may identify neurogenic genes useful for the direct reprogramming of astrocytes into neurons.

objectiveTo identify Mll1-dependent transcriptional modules and to determine whether genes in the neurogenic modules can be used to directly reprogram astrocytes into neurons.

methodsWe performed gene coexpression module analysis on microarray data from differentiating wild-type and Mll1-deleted subventricular zone NSCs. Key developmental regulators belonging to the neurogenic modules were overexpressed in Mll1-deleted cells and cultured cortical astrocytes, and cell phenotypes were analyzed by immunocytochemistry and electrophysiology.

resultsTranscriptional modules that correspond to neurogenesis were identified in wild-type NSCs. Modules related to astrocytes and oligodendrocytes were enriched in Mll1-deleted NSCs, consistent with their gliogenic potential. Overexpression of genes selected from the neurogenic modules enhanced the production of neurons from Mll1-deleted cells, and overexpression of Brn4 (Pou3f4) in nonneurogenic cortical astroglia induced their transdifferentiation into electrophysiologically active neurons.

conclusionOur results demonstrate that Mll1 is required for the expression of neurogenic but not gliogenic transcriptional modules in a multipotent NSC population and further indicate that specific Mll1-dependent genes may be useful for direct reprogramming strategies.

Indexed as

AnimalsAstrocytesCell TransdifferentiationHistone-Lysine N-MethyltransferaseMiceMicroarray AnalysisMyeloid-Lymphoid Leukemia ProteinNerve Tissue ProteinsNeural Stem CellsNeurogenesisNeuronsPOU Domain FactorsHistone-Lysine N-MethyltransferaseKmt2a protein, mouseMyeloid-Lymphoid Leukemia ProteinNerve Tissue ProteinsPou3f4 protein, mousePOU Domain Factors

Identifiers

PMID24887289
PMCPMC4420187
OpenAlexW2073306051

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.