Evidence map›Paper›PMID 24887054›Full record

ArticleNature communications2014

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum.

Pedro Almeida, Carla Gonçalves, Sara Teixeira, Diego Libkind, Martin Bontrager, Isabelle Masneuf-Pomarède, Warren Albertin, Pascal Durrens, David James Sherman, Philippe Marullo and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed.

  1. Review
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  10. Research on Engineering theFoods (Basel, Switzerland) · 2024
    Article
  11. Article
  12. Article
  13. The recombination landscape of introgression in yeast.bioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Article
  16. Chromosome-level Subgenome-awarebioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Pedro Almeida1] Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal [2].
Carla Gonçalves1] Centro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal [2].
Sara TeixeiraCentro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.
Diego LibkindLaboratorio de Microbiología Aplicada y Biotecnología, Instituto de Investigaciones en Biodiversidad y Medio-ambiente, INIBIOMA (CONICET-UNComahue), 8400 Bariloche, Argentina.
Martin BontragerLaboratory of Genetics, Genome Center of Wisconsin, Wisconsin Energy Institute, DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Isabelle Masneuf-PomarèdeBordeaux Sciences agro, EA Œnologie 4577, ISVV, Villenave d'Ornon F-33882, France.
Warren AlbertinUniversity Bordeaux, EA Œnologie 4577, ISVV, Villenave d'Ornon F-33882, France.
Pascal DurrensCNRS UMR 5800, University Bordeaux, INRIA project-team Magnome, Talence F33400, France.
David James ShermanCNRS UMR 5800, University Bordeaux, INRIA project-team Magnome, Talence F33400, France.
Philippe Marullo1] University Bordeaux, EA Œnologie 4577, ISVV, Villenave d'Ornon F-33882, France [2] BIOLAFFORT, Bordeaux F-33072, France.
Chris Todd HittingerLaboratory of Genetics, Genome Center of Wisconsin, Wisconsin Energy Institute, DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Paula GonçalvesCentro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.
José Paulo SampaioCentro de Recursos Microbiológicos, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
NIGMS NIH HHS T32 GM007133
6 · The paper itself

Abstract

In addition to Saccharomyces cerevisiae, the cryotolerant yeast species S. uvarum is also used for wine and cider fermentation but nothing is known about its natural history. Here we use a population genomics approach to investigate its global phylogeography and domestication fingerprints using a collection of isolates obtained from fermented beverages and from natural environments on five continents. South American isolates contain more genetic diversity than that found in the Northern Hemisphere. Moreover, coalescence analyses suggest that a Patagonian sub-population gave rise to the Holarctic population through a recent bottleneck. Holarctic strains display multiple introgressions from other Saccharomyces species, those from S. eubayanus being prevalent in European strains associated with human-driven fermentations. These introgressions are absent in the large majority of wild strains and gene ontology analyses indicate that several gene categories relevant for wine fermentation are overrepresented. Such findings constitute a first indication of domestication in S. uvarum.

Indexed as

Genetic VariationMetagenomicsDNA, FungalFermentationPhylogeographySaccharomycesDNA, Fungal

Identifiers

PMID24887054
PMCPMC5081218

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.