Evidence map›Paper›PMID 24886672›Full record

ArticleVirology journal2014

Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon.

Rafael K Campos, Paulo V Boratto, Felipe L Assis, Eric R G R Aguiar, Lorena C F Silva, Jonas D Albarnaz, Fabio P Dornas, Giliane S Trindade, Paulo P Ferreira, João T Marques and 5 more

Abstract read
In one paragraph

Article in Virology journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. Review
  5. Article
  6. Article
  7. Surface fibrils on the particles of nucleocytoviruses: A review.Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
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  20. Rio Negro virophage: Sequencing of the near complete genome and transmission electron microscopy of viral factories and particles.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Rafael K Campos
Paulo V Boratto
Felipe L Assis
Eric R G R Aguiar
Lorena C F Silva
Jonas D Albarnaz
Fabio P Dornas
Giliane S Trindade
Paulo P Ferreira
João T Marques
Catherine Robert
Didier Raoult
Erna G Kroon
Bernard La ScolaDepartamento de Microbiologia, Universidade Federal de Minas Gerais, Laboratório de Vírus, Av, Antônio Carlos, 6627 Pampulha, Belo Horizonte, MG Zip Code 31270-901, Brazil. bernard.la-scola@univ-amu.fr.
Jônatas S Abrahão

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe identification of novel giant viruses from the nucleocytoplasmic large DNA viruses group and their virophages has increased in the last decade and has helped to shed light on viral evolution. This study describe the discovery, isolation and characterization of Samba virus (SMBV), a novel giant virus belonging to the Mimivirus genus, which was isolated from the Negro River in the Brazilian Amazon. We also report the isolation of an SMBV-associated virophage named Rio Negro (RNV), which is the first Mimivirus virophage to be isolated in the Americas. METHODS/

resultsBased on a phylogenetic analysis, SMBV belongs to group A of the putative Megavirales order, possibly a new virus related to Acanthamoeba polyphaga mimivirus (APMV). SMBV is the largest virus isolated in Brazil, with an average particle diameter about 574 nm. The SMBV genome contains 938 ORFs, of which nine are ORFans. The 1,213.6 kb SMBV genome is one of the largest genome of any group A Mimivirus described to date. Electron microscopy showed RNV particle accumulation near SMBV and APMV factories resulting in the production of defective SMBV and APMV particles and decreasing the infectivity of these two viruses by several logs.

conclusionThis discovery expands our knowledge of Mimiviridae evolution and ecology.

Indexed as

PhylogenyBrazilDNA, ViralMicroscopy, Electron, TransmissionMimiviridaeMolecular Sequence DataOpen Reading FramesRainforestRiversSequence Analysis, DNAVirionDNA, Viral

Identifiers

PMID24886672
PMCPMC4113263

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.