ArticleBMC genomics2014
Comparative transcriptome analysis of eggplant (Solanum melongena L.) and turkey berry (Solanum torvum Sw.): phylogenomics and disease resistance analysis.
Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed.
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- Transcriptome Analysis of Eggplant Root in Response to Root-Knot Nematode Infection.Pathogens (Basel, Switzerland) · 2021Article
- Transcriptomic Analysis of Resistant and Susceptible Responses in a New Model Root-Knot Nematode Infection System UsingFrontiers in plant science · 2021Article
- Genetic engineering of eggplant accumulating β-carotene in fruit.Plant cell reports · 2020Article
- Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars.BMC genomics · 2020Article
- The Complete Chloroplast Genomes of TwoPlants (Basel, Switzerland) · 2019Article
- De novo assembly and discovery of genes involved in the response ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019Article
- Whole-Genome Resequencing of Seven Eggplant (Frontiers in plant science · 2019Article
- Comparative Transcriptome Analysis in Eggplant Reveals Selection Trends during Eggplant Domestication.International journal of genomics · 2019Article
- Assessment of an Organ-SpecificG3 (Bethesda, Md.) · 2018Article
- Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data.BMC genomics · 2018Article
- Cultivar-Dependent Responses of Eggplant (Frontiers in plant science · 2018Article
- Comprehensive Characterization of Simple Sequence Repeats in Eggplant (Frontiers in plant science · 2018Article
- Comparative Analysis of the Complete Chloroplast Genome of Four Endangered Herbals of Notopterygium.Genes · 2017Article
- Development and Genetic Characterization of Advanced Backcross Materials and An Introgression Line Population ofFrontiers in plant science · 2017Article
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7 authors.
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Abstract
backgroundEggplant (Solanum melongena L.) and turkey berry (S. torvum Sw.), a wild ally of eggplant with promising multi-disease resistance traits, are of great economic, medicinal and genetic importance, but genomic resources for these species are lacking. In the present study, we sequenced the transcriptomes of eggplant and turkey berry to accelerate research on these two non-model species.
resultsWe built comprehensive, high-quality de novo transcriptome assemblies of the two Leptostemonum clade Solanum species from short-read RNA-Sequencing data. We obtained 34,174 unigenes for eggplant and 38,185 unigenes for turkey berry. Functional annotations based on sequence similarity to known plant datasets revealed a distribution of functional categories for both species very similar to that of tomato. Comparison of eggplant, turkey berry and another 11 plant proteomes resulted in 276 high-confidence single-copy orthologous groups, reasonable phylogenetic tree inferences and reliable divergence time estimations. From these data, it appears that eggplant and its wild Leptostemonum clade relative turkey berry split from each other in the late Miocene, ~6.66 million years ago, and that Leptostemonum split from the Potatoe clade in the middle Miocene, ~15.75 million years ago. Furthermore, 621 and 815 plant resistance genes were identified in eggplant and turkey berry respectively, indicating the variation of disease resistance genes between them.
conclusionsThis study provides a comprehensive transcriptome resource for two Leptostemonum clade Solanum species and insight into their evolutionary history and biological characteristics. These resources establish a foundation for further investigations of eggplant biology and for agricultural improvement of this important vegetable. More generally, we show that RNA-Seq is a fast, reliable and cost-effective method for assessing genome evolution in non-model species.
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