Evidence map›Paper›PMID 24885329›Full record

ArticleBMC biology2014

Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor.

Letícia M S Lery, Lionel Frangeul, Anna Tomas, Virginie Passet, Ana S Almeida, Suzanne Bialek-Davenet, Valérie Barbe, José A Bengoechea, Philippe Sansonetti, Sylvain Brisse and 1 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
4.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 181 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Dual Role for Pld1 inJournal of proteome research · 2025
    Article
  8. Article
  9. A Comprehensive Overview ofInfection and drug resistance · 2025
    Review
  10. Review
  11. Siderophore-mediated iron acquisition byJournal of bacteriology · 2024
    Article
  12. Transferable AmpCs inAntimicrobial agents and chemotherapy · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Frontiers in microbiology · 2023
    Article
  20. Review

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 5 countries.

Letícia M S LeryInstitut Pasteur - Pathogénie Microbienne Moléculaire, Paris, France. llery@biof.ufrj.br.
Lionel Frangeul
Anna Tomas
Virginie Passet
Ana S Almeida
Suzanne Bialek-Davenet
Valérie Barbe
José A Bengoechea
Philippe Sansonetti
Sylvain Brisse
Régis Tournebize
Institut Pasteur · FRCentro de Investigación Biomédica en Red de Enfermedades Respiratorias · ESInserm · FRCentre National de la Recherche Scientifique · FRGenoscope · FRUniversidade Federal do Rio de Janeiro · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKlebsiella pneumoniae strains are pathogenic to animals and humans, in which they are both a frequent cause of nosocomial infections and a re-emerging cause of severe community-acquired infections. K. pneumoniae isolates of the capsular serotype K2 are among the most virulent. In order to identify novel putative virulence factors that may account for the severity of K2 infections, the genome sequence of the K2 reference strain Kp52.145 was determined and compared to two K1 and K2 strains of low virulence and to the reference strains MGH 78578 and NTUH-K2044.

resultsIn addition to diverse functions related to host colonization and virulence encoded in genomic regions common to the four strains, four genomic islands specific for Kp52.145 were identified. These regions encoded genes for the synthesis of colibactin toxin, a putative cytotoxin outer membrane protein, secretion systems, nucleases and eukaryotic-like proteins. In addition, an insertion within a type VI secretion system locus included sel1 domain containing proteins and a phospholipase D family protein (PLD1). The pld1 mutant was avirulent in a pneumonia model in mouse. The pld1 mRNA was expressed in vivo and the pld1 gene was associated with K. pneumoniae isolates from severe infections. Analysis of lipid composition of a defective E. coli strain complemented with pld1 suggests an involvement of PLD1 in cardiolipin metabolism.

conclusionsDetermination of the complete genome of the K2 reference strain identified several genomic islands comprising putative elements of pathogenicity. The role of PLD1 in pathogenesis was demonstrated for the first time and suggests that lipid metabolism is a novel virulence mechanism of K. pneumoniae.

Indexed as

Multigene FamilyAmino Acid SequenceAnimalsBacterial ProteinsBacterial Secretion SystemsGenes, BacterialGenome, BacterialGenomic IslandsKlebsiella pneumoniaeLipid MetabolismMiceMolecular Sequence AnnotationMolecular Sequence DataMutagenesis, InsertionalPhospholipase DPlasmidsBacterial ProteinsBacterial Secretion SystemsPhospholipase DVirulence Factors

Identifiers

PMID24885329
PMCPMC4068068
OpenAlexW2129183301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.