Evidence map›Paper›PMID 24884609›Full record

ArticleJournal of proteome research2014

Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4.

Kevin Brown Chandler, Zuzana Brnakova, Miloslav Sanda, Shuo Wang, Stephanie H Stalnaker, Robert Bridger, Peng Zhao, Lance Wells, Nathan J Edwards, Radoslav Goldman

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. High sensitivity glycomics in biomedicine.Mass spectrometry reviews · 2022
    Review
  7. Article
  8. Article
  9. Age-Related Changes in the Matrisome of the Mouse Skeletal Muscle.International journal of molecular sciences · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Application Value of Mass Spectrometry in the Differentiation of Benign and Malignant Liver Tumors.Medical science monitor : international medical journal of experimental and clinical research · 2017
    Article
  17. Article
  18. Article
  19. N-Glycopeptide Profiling in Arabidopsis Inflorescence.Molecular & cellular proteomics : MCP · 2016
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kevin Brown ChandlerDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University , Washington, D.C. 20057, United States.
Zuzana Brnakova
Miloslav Sanda
Shuo Wang
Stephanie H Stalnaker
Robert Bridger
Peng Zhao
Lance Wells
Nathan J Edwards
Radoslav Goldman
Georgetown University · USUniversity of Georgia · USGeorgetown University Medical Center · US

Funding

Tissue Culture Shared ResourceP30CA051008 · NCI · GEORGETOWN UNIVERSITY · PI STEPHEN W BYERS · 1990 to 2026
$71.5M
TR&D1: Stem Cell and Induced Pluripotent Stem Cell Resources (Pages 116-134)P41GM103490 · NIGMS · UNIVERSITY OF GEORGIA · PI PIERCE, J. MICHAEL · 2012 to 2018
$13.7M
Glycans in Hepatocellular CarcinomaR01CA135069 · NCI · GEORGETOWN UNIVERSITY · PI GOLDMAN, RADOSLAV · 2009 to 2019
$4.1M
Alliance of Glycobiologists for Detection of CancerU01CA168926 · NCI · GEORGETOWN UNIVERSITY · PI GOLDMAN, RADOSLAV · 2012 to 2016
$2.0M
R01-Proteomic characterization of alternate splicing and cSNP protein isoformsR01CA126189 · NCI · UNIV OF MARYLAND, COLLEGE PARK · PI EDWARDS, NATHAN J · 2006 to 2008
$808k
NCI NIH HHS CA126189NCI NIH HHS P30 CA051008NCI NIH HHS P30CA51008NCI NIH HHS R01 CA126189NCI NIH HHS R01 CA135069NCI NIH HHS R01CA135069NCI NIH HHS U01 CA168926NIGMS NIH HHS P41 GM103490
6 · The paper itself

Abstract

Inter-alpha-trypsin inhibitor heavy chain H4 (ITIH4) is a 120 kDa acute-phase glycoprotein produced primarily in the liver, secreted into the blood, and identified in serum. ITIH4 is involved in liver development and stabilization of the extracellular matrix (ECM), and its expression is altered in liver disease. In this study, we aimed to characterize glycosylation of recombinant and serum-derived ITIH4 using analytical mass spectrometry. Recombinant ITIH4 was analyzed to optimize glycopeptide analyses, followed by serum-derived ITIH4. First, we confirmed that the four ITIH4 N-X-S/T sequons (N81, N207, N517, and N577) were glycosylated by treating ITIH4 tryptic/GluC glycopeptides with PNGaseF in the presence of (18)O water. Next, we performed glycosidase-assisted LC-MS/MS analysis of ITIH4 trypsin-GluC glycopeptides enriched via hydrophilic interaction liquid chromatography to characterize ITIH4 N-glycoforms. While microheterogeneity of N-glycoforms differed between ITIH4 protein expressed in HEK293 cells and protein isolated from serum, occupancy of N-glycosylation sites did not differ. A fifth N-glycosylation site was discovered at N274 with the rare nonconsensus NVV motif. Site N274 contained high-mannose N-linked glycans in both serum and recombinant ITIH4. We also identified isoform-specific ITIH4 O-glycoforms and documented that utilization of O-glycosylation sites on ITIH4 differed between the cell line and serum.

Indexed as

Protein Processing, Post-TranslationalAmino Acid SequenceBlood ProteinsCarbohydrate ConformationCarbohydrate SequenceGlycoproteinsGlycosylationHEK293 CellsHumansMolecular Sequence DataProteinase Inhibitory Proteins, SecretoryProtein IsoformsBlood ProteinsGlycoproteinsITIH4 protein, humanProteinase Inhibitory Proteins, SecretoryProtein Isoforms

Identifiers

PMID24884609
PMCPMC4084840
OpenAlexW2318280959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.