ArticleBMC genomics2014
Complete sequencing of Novosphingobium sp. PP1Y reveals a biotechnologically meaningful metabolic pattern.
Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 46 citations in OpenAlex.
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- Diversity, Composition and Resilience of the Root Microbiome of Tomato Plants in a Hydroponic Rockwool System.Environmental microbiology reports · 2026Article
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- Genetic tools for engineering Zymomonas mobilis, Cereibacter sphaeroides and Novosphingobium aromaticivorans to improve production of bioenergy compounds.Microbial cell factories · 2025Review
- Endophytic Bacterial Community, Core Taxa, and Functional Variations Within the Fruiting Bodies ofMicroorganisms · 2024Article
- Genomic and physiological characterization of Novosphingobium terrae sp. nov., an alphaproteobacterium isolated from Cerrado soil containing a mega-sized chromid.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023Article
- Bioconversion of 4-hydroxyestradiol by extradiol ring-cleavage dioxygenases from Novosphingobium sp. PP1Y.Scientific reports · 2023Article
- Machine Learning Approach Reveals the Assembly of Activated Sludge Microbiome with Different Carbon Sources during Microcosm Startup.Microorganisms · 2021Article
- PahT regulates carbon fluxes in Novosphingobium sp. HR1a and influences its survival in soil and rhizospheres.Environmental microbiology · 2021Article
- Novosphingobium sp. PP1Y as a novel source of outer membrane vesicles.Journal of microbiology (Seoul, Korea) · 2019Article
- Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans.Applied and environmental microbiology · 2018Article
- The High-Throughput Analyses Era: Are We Ready for the Data Struggle?High-throughput · 2018Article
- Human Microbiome Acquisition and Bioinformatic Challenges in Metagenomic Studies.International journal of molecular sciences · 2018Review
- A common microbial signature is present in the lower airways of interstitial lung diseases including sarcoidosis.Sarcoidosis, vasculitis, and diffuse lung diseases : official journal of WASOG · 2018Article
- Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation.PloS one · 2018Article
- Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq.Scientific reports · 2017Article
- The complete 12 Mb genome and transcriptome of Nonomuraea gerenzanensis with new insights into its duplicated "magic" RNA polymerase.Scientific reports · 2016Article
- Draft Genome Sequence of the Carbofuran-Mineralizing Novosphingobium sp. Strain KN65.2.Genome announcements · 2015Article
- Complete genome sequence of Novosphingobium pentaromativorans US6-1(T).Standards in genomic sciences · 2015Article
Corrections and comments
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Authors and funding
13 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundNovosphingobium sp. strain PP1Y is a marine α-proteobacterium adapted to grow at the water/fuel oil interface. It exploits the aromatic fraction of fuel oils as a carbon and energy source. PP1Y is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. Here, we report the complete functional annotation of the whole Novosphingobium genome.
resultsPP1Y genome analysis and its comparison with other Sphingomonadal genomes has yielded novel insights into the molecular basis of PP1Y's phenotypic traits, such as its peculiar ability to encapsulate and degrade the aromatic fraction of fuel oils. In particular, we have identified and dissected several highly specialized metabolic pathways involved in: (i) aromatic hydrocarbon degradation; (ii) resistance to toxic compounds; and (iii) the quorum sensing mechanism.
conclusionsIn summary, the unraveling of the entire PP1Y genome sequence has provided important insight into PP1Y metabolism and, most importantly, has opened new perspectives about the possibility of its manipulation for bioremediation purposes.
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