Evidence map›Paper›PMID 24884371›Full record

ArticleBMC genomics2014

RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.

Eleni A Spyropoulou, Michel A Haring, Robert C Schuurink

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 149 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Biosynthesis of Camphane Volatile Terpenes inPlants (Basel, Switzerland) · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Transcriptome analysis ofFrontiers in plant science · 2025
    Article
  9. Article
  10. Review
  11. AInternational journal of molecular sciences · 2024
    Article
  12. Article
  13. WRKY Transcription Factors inBiomolecules · 2023
    Article
  14. International journal of molecular sciences · 2023
    Article
  15. Review
  16. Methyl Jasmonate- and Salicylic Acid-Induced Transcription FactorInternational journal of molecular sciences · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. ODORANT1 targets multiple metabolic networks in petunia flowers.The Plant journal : for cell and molecular biology · 2022
    Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Eleni A Spyropoulou
Michel A Haring
Robert C SchuurinkDepartment of Plant Physiology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098 XH, The Netherlands. R.C.Schuurink@uva.nl.
University of Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlandular trichomes are production and storage organs of specialized metabolites such as terpenes, which play a role in the plant's defense system. The present study aimed to shed light on the regulation of terpene biosynthesis in Solanum lycopersicum trichomes by identification of transcription factors (TFs) that control the expression of terpene synthases.

resultsA trichome transcriptome database was created with a total of 27,195 contigs that contained 743 annotated TFs. Furthermore a quantitative expression database was obtained of jasmonic acid-treated trichomes. Sixteen candidate TFs were selected for further analysis. One TF of the MYC bHLH class and one of the WRKY class were able to transiently transactivate S. lycopersicum terpene synthase promoters in Nicotiana benthamiana leaves. Strikingly, SlMYC1 was shown to act synergistically with a previously identified zinc finger-like TF, Expression of Terpenoids 1 (SlEOT1) in transactivating the SlTPS5 promoter.

conclusionsHigh-throughput sequencing of tomato stem trichomes led to the discovery of two transcription factors that activated several terpene synthase promoters. Our results identified new elements of the transcriptional regulation of tomato terpene biosynthesis in trichomes, a largely unexplored field.

Indexed as

Alkyl and Aryl TransferasesContig MappingCyclopentanesDatabases, GeneticHigh-Throughput Nucleotide SequencingOxylipinsPlant LeavesPlant ProteinsPromoter Regions, GeneticSequence Analysis, RNASolanum lycopersicumTerpenesTranscriptional ActivationTranscription FactorsTranscriptomeAlkyl and Aryl TransferasesCyclopentanesjasmonic acidOxylipinsPlant ProteinsTerpenesterpene synthaseTranscription Factors

Identifiers

PMID24884371
PMCPMC4041997
OpenAlexW2115021849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.