Evidence map›Paper›PMID 24882497›Full record

ArticleJournal of virological methods2014

Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus in latent turtle infections.

Alonzo Alfaro-Núñez, M Thomas P Gilbert

Erratum issuedOpen access · greenAbstract readValidation Study
In one paragraph

Article in Journal of virological methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

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  5. Threats and Vulnerabilities for the Globally Distributed Olive Ridley (Animals : an open access journal from MDPI · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. The Concurrent Detection of Chelonid Alphaherpesvirus 5 andAnimals : an open access journal from MDPI · 2021
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Alonzo Alfaro-NúñezSection for Evolutionary Genomics, Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark. Electronic address: alonzoalfaro@gmail.com.
M Thomas P GilbertSection for Evolutionary Genomics, Centre for GeoGenetics, Natural History Museum of Denmark, Øster Voldgade 5-7, 1350 Copenhagen K, Denmark; Trace and Environmental DNA Laboratory, School of Environment and Agriculture, Curtin University, Perth, Western Australia 6845, Australia.
Curtin University · AUNatural History Museum Aarhus · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Chelonid fibropapilloma-associated herpesvirus (CFPHV) is hypothesized to be the causative agent of fibropapillomatosis, a neoplastic disease in sea turtles, given its consistent detection by PCR in fibropapilloma tumours. CFPHV has also been detected recently by PCR in tissue samples from clinically healthy (non exhibiting fibropapilloma tumours) turtles, thus representing presumably latent infections of the pathogen. Given that template copy numbers of viruses in latent infections can be very low, extremely sensitive PCR assays are needed to optimize detection efficiency. In this study, efficiency of several PCR assays designed for CFPHV detection is explored and compared to a method published previously. The results show that adoption of a triplet set of singleplex PCR assays outperforms other methods, with an approximately 3-fold increase in detection success in comparison to the standard assay. Thus, a new assay for the detection of CFPHV DNA markers is presented, and adoption of its methodology is recommended in future CFPHV screens among sea turtles.

Indexed as

AnimalsDNA, ViralHerpesviridaeHerpesviridae InfectionsMolecular Diagnostic TechniquesPapillomaPolymerase Chain ReactionSensitivity and SpecificityTurtlesVeterinary MedicineDNA, ViralChelonid fibropapilloma-associated herpesvirusFibropapillomatosisLatencyPCRSea turtlesSensitivity

Identifiers

PMID24882497
PMCPMC7119791
OpenAlexW1963741199

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.