Evidence map›Paper›PMID 24882217›Full record

ArticleImmunity2014

Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes.

Orane Visvikis, Nnamdi Ihuegbu, Sid A Labed, Lyly G Luhachack, Anna-Maria F Alves, Amanda C Wollenberg, Lynda M Stuart, Gary D Stormo, Javier E Irazoqui

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 213 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
213citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

213 citing papers in PubMed, 1 synthesis or guideline pooled it, 335 citations in OpenAlex.

  1. Guideline
  2. Cholinergic activation of HLH-30/TFEB promotesbioRxiv : the preprint server for biology · 2026
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153 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Orane Visvikis *Laboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Nnamdi Ihuegbu *Department of Genetics, Center for Genome Sciences, Washington University Medical School, Saint Louis, Missouri 63118, USA.
Sid A LabedLaboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Lyly G LuhachackLaboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Anna-Maria F AlvesLaboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Amanda C WollenbergLaboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Lynda M StuartBill and Melinda Gates Foundation, Seattle, Washington 98109, USA.
Gary D StormoDepartment of Genetics, Center for Genome Sciences, Washington University Medical School, Saint Louis, Missouri 63118, USA.
Javier E IrazoquiLaboratory of Comparative Immunology, Center for the Study of Inflammatory Bowel Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Harvard University · USMassachusetts General Hospital · USWashington University in St. Louis · USBill & Melinda Gates Foundation · US

Funding

Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTOPHER P DUGGAN · 1994 to 2026
$31.6M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
DNA PATTERN IDENTIFICATION AND ANALYSISR01HG000249 · NHGRI · WASHINGTON UNIVERSITY · PI STORMO, GARY D · 1990 to 2017
$5.6M
Role of MiT Transcription Factors in Host Defense Against Bacterial InfectionR01GM101056 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI IRAZOQUI, JAVIER ELBIO · 2012 to 2022
$3.9M
Recognizing Virulent PathogensR01GM102482 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI STUART, LYNDA · 2013 to 2016
$1.3M
Recruitment of New Faculty in Innate Immunity ResearchP30GM092431 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI KLEINMAN, RONALD E · 2009 to 2010
$814k
NHGRI NIH HHS R01 HG000249NHGRI NIH HHS R01-HG000249NIDDK NIH HHS P30 DK040561NIDDK NIH HHS P30 DK043351NIGMS NIH HHS P30 GM092431NIGMS NIH HHS P30-GM092431NIGMS NIH HHS R01 GM101056NIGMS NIH HHS R01-GM101056NIGMS NIH HHS R01-GM101056-S1NIGMS NIH HHS R01 GM102482NIH HHS P40 OD010440NIH HHS P40-OD010440
6 · The paper itself

Abstract

Animal host defense against infection requires the expression of defense genes at the right place and the right time. Understanding such tight control of host defense requires the elucidation of the transcription factors involved. By using an unbiased approach in the model Caenorhabditis elegans, we discovered that HLH-30 (known as TFEB in mammals) is a key transcription factor for host defense. HLH-30 was activated shortly after Staphylococcus aureus infection, and drove the expression of close to 80% of the host response, including antimicrobial and autophagy genes that were essential for host tolerance of infection. TFEB was also rapidly activated in murine macrophages upon S. aureus infection and was required for proper transcriptional induction of several proinflammatory cytokines and chemokines. Thus, our data suggest that TFEB is a previously unappreciated, evolutionarily ancient transcription factor in the host response to infection.

Indexed as

AnimalsAutophagyBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsEnterococcus faecalisImmunity, InnateMacrophagesMicePseudomonas aeruginosaPseudomonas InfectionsRNA InterferenceRNA, Small InterferingSalmonella entericaSalmonella InfectionsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsHLH-30 protein, C elegansRNA, Small InterferingTcfeb protein, mouse

Identifiers

PMID24882217
PMCPMC4104614
OpenAlexW2067520027

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.