Evidence map›Paper›PMID 24882012›Full record

ArticleCell reports2014

Widespread changes in the posttranscriptional landscape at the Drosophila oocyte-to-embryo transition.

Iva Kronja, Bingbing Yuan, Stephen W Eichhorn, Kristina Dzeyk, Jeroen Krijgsveld, David P Bartel, Terry L Orr-Weaver

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
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  3. Regulatory landscape of widespread stop codon readthrough inbioRxiv : the preprint server for biology · 2026
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  16. Muskelin acts as a substrate receptor of the highly regulatedbioRxiv : the preprint server for biology · 2024
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  17. Greatwall-Endos-PP2A/B55Open biology · 2024
    Article
  18. Article
  19. Review
  20. Article

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Iva KronjaWhitehead Institute, Cambridge, MA 02142, USA.
Bingbing YuanWhitehead Institute, Cambridge, MA 02142, USA.
Stephen W EichhornWhitehead Institute, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Kristina DzeykEuropean Molecular Biology Laboratory, 69117 Heidelberg, Germany.
Jeroen KrijgsveldEuropean Molecular Biology Laboratory, 69117 Heidelberg, Germany.
David P BartelWhitehead Institute, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Terry L Orr-WeaverWhitehead Institute, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA. Electronic address: weaver@wi.mit.edu.
European Molecular Biology Laboratory · DEMassachusetts Institute of Technology · USWhitehead Institute for Biomedical Research · USHoward Hughes Medical Institute · US

Funding

PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
MicroRNA genes and their functionsR01GM067031 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI BARTEL, DAVID P · 2002 to 2015
$7.3M
REPLICATION AND POLYTENIZATION IN DROSOPHILA DEVELOPMENTR01GM039341 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI ORR-WEAVER, TERRY L. · 1993 to 2013
$4.7M
REPLICATION AND POLYTENIZATION IN DROSOPHILA DEVELOPMENTR29GM039341 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI ORR-WEAVER, TERRY L. · 1988 to 1992
–
Howard Hughes Medical InstituteNIGMS NIH HHS GM39341NIGMS NIH HHS R01 GM039341NIGMS NIH HHS R01 GM067031NIGMS NIH HHS R01 GM084947NIGMS NIH HHS T32 GM007287
6 · The paper itself

Abstract

The oocyte-to-embryo transition marks the onset of development. The initial phase of this profound change from the differentiated oocyte to the totipotent embryo occurs in the absence of both transcription and mRNA degradation. Here we combine global polysome profiling, ribosome-footprint profiling, and quantitative mass spectrometry in a comprehensive approach to delineate the translational and proteomic changes that occur during this important transition in Drosophila. Our results show that PNG kinase is a critical regulator of the extensive changes in the translatome, acting uniquely at this developmental window. Analysis of the proteome in png mutants provided insights into the contributions of translation to changes in protein levels, revealing a compensatory dynamic between translation and protein turnover during proteome remodeling at the return to totipotency. The proteome changes additionally suggested regulators of meiosis and early embryogenesis, including the conserved H3K4 demethylase LID, which we demonstrated is required during this period despite transcriptional inactivity.

Indexed as

Gene Expression Regulation, DevelopmentalRNA Processing, Post-TranscriptionalAnimalsDrosophilaDrosophila ProteinsEmbryo, NonmammalianHistone DemethylasesOocytesPolyribosomesProtein Serine-Threonine KinasesProtein StabilityProteomeRNA, MessengerRNA StabilityDrosophila ProteinsHistone DemethylasesLid protein, Drosophilapng protein, DrosophilaProtein Serine-Threonine KinasesProteomeRNA, Messenger

Identifiers

PMID24882012
PMCPMC4143395
OpenAlexW2127982547

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.