Evidence map›Paper›PMID 24881051›Full record

ArticleMolecular biology and evolution2014

New gene evolution in the bonus-TIF1-γ/TRIM33 family impacted the architecture of the vertebrate dorsal-ventral patterning network.

Robert G Wisotzkey, Janine C Quijano, Michael J Stinchfield, Stuart J Newfeld

Open access · greenAbstract read
In one paragraph

Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Multiple Roles of dXNP and dADD1-International journal of molecular sciences · 2023
    Review
  4. Article
  5. A Case Report of Anti-TIF1-Case reports in rheumatology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Robert G WisotzkeyDepartment of Biological Sciences, California State University, East Bay.
Janine C QuijanoDepartment of Biological Sciences, California State University, East BaySchool of Life Sciences, Arizona State University.
Michael J StinchfieldSchool of Life Sciences, Arizona State University.
Stuart J NewfeldSchool of Life Sciences, Arizona State University newfeld@asu.edu.
Arizona State University · USCalifornia State University, East Bay · US

Funding

Computatonal Analysis of Gene Expression Pattern ImagesR01HG002516 · NHGRI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI KUMAR, SUDHIR · 2003 to 2013
$5.3M
Mechanisms and functions of Drosophila motoneuron dendritic shape developmentR01NS072128 · NINDS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI NEWFELD, STUART J · 2011 to 2015
$1.1M
NHGRI NIH HHS HG002516NHGRI NIH HHS R01 HG002516NINDS NIH HHS NS072128NINDS NIH HHS R01 NS072128
6 · The paper itself

Abstract

Uncovering how a new gene acquires its function and understanding how the function of a new gene influences existing genetic networks are important topics in evolutionary biology. Here, we demonstrate nonconservation for the embryonic functions of Drosophila Bonus and its newest vertebrate relative TIF1-γ/TRIM33. We showed previously that TIF1-γ/TRIM33 functions as an ubiquitin ligase for the Smad4 signal transducer and antagonizes the Bone Morphogenetic Protein (BMP) signaling network underlying vertebrate dorsal-ventral axis formation. Here, we show that Bonus functions as an agonist of the Decapentaplegic (Dpp) signaling network underlying dorsal-ventral axis formation in flies. The absence of conservation for the roles of Bonus and TIF1-γ/TRIM33 reveals a shift in the dorsal-ventral patterning networks of flies and mice, systems that were previously considered wholly conserved. The shift occurred when the new gene TIF1-γ/TRIM33 replaced the function of the ubiquitin ligase Nedd4L in the lineage leading to vertebrates. Evidence of this replacement is our demonstration that Nedd4 performs the function of TIF1-γ/TRIM33 in flies during dorsal-ventral axis formation. The replacement allowed vertebrate Nedd4L to acquire novel functions as a ubiquitin ligase of vertebrate-specific Smad proteins. Overall our data reveal that the architecture of the Dpp/BMP dorsal-ventral patterning network continued to evolve in the vertebrate lineage, after separation from flies, via the incorporation of new genes.

Indexed as

Evolution, MolecularAnimalsBayes TheoremBody PatterningDrosophila melanogasterDrosophila ProteinsEndosomal Sorting Complexes Required for TransportHumansMiceNedd4 Ubiquitin Protein LigasesPhylogenySignal TransductionTranscription FactorsUbiquitin-Protein LigasesVertebratesBon protein, Drosophiladpp protein, DrosophilaDrosophila ProteinsEndosomal Sorting Complexes Required for TransportNedd4L protein, humanNedd4l protein, mouseNedd4 protein, humanNedd4 Ubiquitin Protein LigasesTranscription FactorsUbiquitin-Protein LigasesBonus/TIF1/TRIMDorsal/NF-κBdorsal–ventral axisDpp/BMP/TGF-βDrosophilaembryonic development

Identifiers

PMID24881051
PMCPMC4137705
OpenAlexW2171399022

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.