Evidence map›Paper›PMID 24879641›Full record

ArticleHuman molecular genetics2014

Inheritance of rare functional GCKR variants and their contribution to triglyceride levels in families.

Matthew G Rees, Anne Raimondo, Jian Wang, Matthew R Ban, Mindy I Davis, Amy Barrett, Jessica Ranft, David Jagdhuhn, Rica Waterstradt, Simone Baltrusch and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Genetics of Hypertriglyceridemia.Frontiers in endocrinology · 2020
    Review
  8. Article
  9. Pathogenic Anti-Müllerian Hormone Variants in Polycystic Ovary Syndrome.The Journal of clinical endocrinology and metabolism · 2017
    Article
  10. Genetics of Triglycerides and the Risk of Atherosclerosis.Current atherosclerosis reports · 2017
    Review
  11. Review
  12. Genetic effects on hypertriglyceridemic waist phenotype:International journal of clinical and experimental pathology · 2017
    Article
  13. Type 1 Hyperlipoproteinemia Due to Compound Heterozygous Rare Variants in GCKR.The Journal of clinical endocrinology and metabolism · 2016
    Article
  14. Genetics of Lipid and Lipoprotein Disorders and Traits.Current genetic medicine reports · 2016
    Review
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Matthew G ReesOxford Centre for Diabetes, Endocrinology & Metabolism, University of Oxford, Oxford OX3 7LE, UK, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA, National Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850, USA.
Anne RaimondoOxford Centre for Diabetes, Endocrinology & Metabolism, University of Oxford, Oxford OX3 7LE, UK.
Jian WangDepartments of Medicine and Biochemistry, Schulich School of Medicine and Dentistry, Robarts Research Institute, University of Western Ontario, London, ON N6A 3K6, Canada.
Matthew R BanDepartments of Medicine and Biochemistry, Schulich School of Medicine and Dentistry, Robarts Research Institute, University of Western Ontario, London, ON N6A 3K6, Canada.
Mindy I DavisNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850, USA.
Amy BarrettOxford Centre for Diabetes, Endocrinology & Metabolism, University of Oxford, Oxford OX3 7LE, UK.
Jessica RanftInstitute for Medical Biochemistry & Molecular Biology, University of Rostock, Rostock 18057, Germany and.
David JagdhuhnInstitute for Medical Biochemistry & Molecular Biology, University of Rostock, Rostock 18057, Germany and.
Rica WaterstradtInstitute for Medical Biochemistry & Molecular Biology, University of Rostock, Rostock 18057, Germany and.
Simone BaltruschInstitute for Medical Biochemistry & Molecular Biology, University of Rostock, Rostock 18057, Germany and.
Anton SimeonovNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, MD 20850, USA.
Francis S CollinsNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Robert A HegeleDepartments of Medicine and Biochemistry, Schulich School of Medicine and Dentistry, Robarts Research Institute, University of Western Ontario, London, ON N6A 3K6, Canada.
Anna L GloynOxford Centre for Diabetes, Endocrinology & Metabolism, University of Oxford, Oxford OX3 7LE, UK, NIHR Oxford Biomedical Research Centre, ORH Trust, OCDEM, Churchill Hospital, Oxford OX3 7LE, UK anna.gloyn@drl.ox.ac.uk.
University of Rostock · DENational Center for Advancing Translational Sciences · USWestern University · CAOxford Centre for Diabetes, Endocrinology and Metabolism · GBNational Human Genome Research Institute · USUniversity of Oxford · GB

Funding

NIH Chemical Genomics CenterZIBTR000004 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MCKEW, JOHN · 2012 to 2014
$52.3M
Genetic analysis of type II diabetes in Finnish populationZIAHG000024 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ERDOS, MICHAEL · 2009 to 2025
$38.2M
GENETIC ANALYSIS OF TYPE II DIABETES IN FINNISH POPULATIONZ01HG000024 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI COLLINS, FRANCIS S. · 1995 to 2008
$6.2M
Development of Diverse Assay Formats to Study the Interaction of Glucokinase (GCK) with Glucokinase Regulatory Protein (GKRP) and Analysis of the Effect of Clinical Mutations on GKRPZIATR000125 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI SHEN, MIN · 2015 to 2015
$19k
CIHR MOP13430CIHR MOP79533Intramural NIH HHSNHGRI NIH HHS Z01 HG000024Wellcome Trust 095101Wellcome Trust 095101/Z/10/Z
6 · The paper itself

Abstract

Significant resources have been invested in sequencing studies to investigate the role of rare variants in complex disease etiology. However, the diagnostic interpretation of individual rare variants remains a major challenge, and may require accurate variant functional classification and the collection of large numbers of variant carriers. Utilizing sequence data from 458 individuals with hypertriglyceridemia and 333 controls with normal plasma triglyceride levels, we investigated these issues using GCKR, encoding glucokinase regulatory protein. Eighteen rare non-synonymous GCKR variants identified in these 791 individuals were comprehensively characterized by a range of biochemical and cell biological assays, including a novel high-throughput-screening-based approach capable of measuring all variant proteins simultaneously. Functionally deleterious variants were collectively associated with hypertriglyceridemia, but a range of in silico prediction algorithms showed little consistency between algorithms and poor agreement with functional data. We extended our study by obtaining sequence data on family members; however, functional variants did not co-segregate with triglyceride levels. Therefore, despite evidence for their collective functional and clinical relevance, our results emphasize the low predictive value of rare GCKR variants in individuals and the complex heritability of lipid traits.

Indexed as

Polymorphism, Single NucleotideAdaptor Proteins, Signal TransducingAlgorithmsAnimalsCase-Control StudiesChlorocebus aethiopsCOS CellsGenetic VariationHeLa CellsHumansHyperlipoproteinemia Type IVMiceModels, MolecularProtein Structure, TertiarySequence Analysis, DNATriglyceridesAdaptor Proteins, Signal TransducingGCKR protein, humanTriglycerides

Identifiers

PMID24879641
PMCPMC4168830
OpenAlexW2109535462

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.