Evidence map›Paper›PMID 24879464›Full record

ArticleGenetics2014

Dating rare mutations from small samples with dense marker data.

Luke C Gandolfo, Melanie Bahlo, Terence P Speed

Abstract read
In one paragraph

Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed.

  1. Article
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  3. The Tyrolean FounderBiomolecules · 2026
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  7. Identification of a putative founder effect involving the HACE1:c.1396C>T variant in two Iranian families and review of reported cases.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Review
  8. Article
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  11. Article
  12. Article
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  14. Genetic history of Scythia.Science advances · 2025
    Article
  15. Article
  16. The ZFHX3 GGC Repeat Expansion Underlying Spinocerebellar Ataxia Type 4 has a Common Ancestral Founder.Movement disorders : official journal of the Movement Disorder Society · 2025
    Article
  17. RareBrain communications · 2025
    Article
  18. Article
  19. Article
  20. Canine RNF170 Single Base Deletion in a Naturally Occurring Model for Human Neuroaxonal Dystrophy.Movement disorders : official journal of the Movement Disorder Society · 2024
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Luke C GandolfoDepartment of Mathematics and Statistics, University of Melbourne, Melbourne, Victoria, 3010 Australia Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, 3052 Australia gandolfo@wehi.edu.au.
Melanie BahloDepartment of Mathematics and Statistics, University of Melbourne, Melbourne, Victoria, 3010 Australia Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, 3052 Australia.
Terence P SpeedDepartment of Mathematics and Statistics, University of Melbourne, Melbourne, Victoria, 3010 Australia Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, 3052 Australia Department of Statistics, University of California, Berkeley, California 94720-3860.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a method for estimating the age of a mutation based on the genetic length of ancestral haplotypes shared between individuals carrying the mutation. The method can be reliably applied to small samples, typical of situations involving rare mutations, and makes effective use of modern high-density SNP data, thus overcoming two of the limitations with existing methods. The method provides age estimates and confidence intervals without the use of asymptotic theory and is applicable to genealogies in which the data are independent or correlated. In the correlated case we estimate the correlation directly from the data, rather than relying on a model for the genealogy. To demonstrate the method's efficacy, we provide simulation results and compare it to other methods. The length data are obtained with a simple procedure, and an R script is available for performing the calculations.

Indexed as

Evolution, MolecularGenetic MarkersMutationChromosome MappingComputer SimulationDNA Mutational AnalysisGenetic LociHaplotypesHumansLinkage DisequilibriumModels, GeneticPolymorphism, Single NucleotideGenetic Markersallele agehigh-density SNP datalinkage disequilibriummutation datingsmall samples

Identifiers

PMID24879464
PMCPMC4125402

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.