Evidence map›Paper›PMID 24879124›Full record

ArticleEukaryotic cell2014

Heterochromatin controls γH2A localization in Neurospora crassa.

Takahiko Sasaki, Kelsey L Lynch, Caitlin V Mueller, Steven Friedman, Michael Freitag, Zachary A Lewis

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Tau Oligomers Neurotoxicity.Life (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Review
  9. Article
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  11. Article
  12. Review
  13. Article
  14. Article
  15. Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Takahiko SasakiDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Kelsey L LynchDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Caitlin V MuellerDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Steven FriedmanDepartment of Biochemistry and Biophysics, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, USA.
Michael FreitagDepartment of Biochemistry and Biophysics, Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, USA.
Zachary A LewisDepartment of Microbiology, University of Georgia, Athens, Georgia, USA zlewis@uga.edu.
University of Georgia · USOregon State University · US

Funding

Assembly and Maintenance of Centromeres in Filamentous FungiR01GM097637 · NIGMS · OREGON STATE UNIVERSITY · PI FREITAG, MICHAEL · 2011 to 2015
$1.3M
NIGMS NIH HHS GM097637NIGMS NIH HHS R01 GM097637
6 · The paper itself

Abstract

In response to genotoxic stress, ATR and ATM kinases phosphorylate H2A in fungi and H2AX in animals on a C-terminal serine. The resulting modified histone, called γH2A, recruits chromatin-binding proteins that stabilize stalled replication forks or promote DNA double-strand-break repair. To identify genomic loci that might be prone to replication fork stalling or DNA breakage in Neurospora crassa, we performed chromatin immunoprecipitation (ChIP) of γH2A followed by next-generation sequencing (ChIP-seq). γH2A-containing nucleosomes are enriched in Neurospora heterochromatin domains. These domains are comprised of A·T-rich repetitive DNA sequences associated with histone H3 methylated at lysine-9 (H3K9me), the H3K9me-binding protein heterochromatin protein 1 (HP1), and DNA cytosine methylation. H3K9 methylation, catalyzed by DIM-5, is required for normal γH2A localization. In contrast, γH2A is not required for H3K9 methylation or DNA methylation. Normal γH2A localization also depends on HP1 and a histone deacetylase, HDA-1, but is independent of the DNA methyltransferase DIM-2. γH2A is globally induced in dim-5 mutants under normal growth conditions, suggesting that the DNA damage response is activated in these mutants in the absence of exogenous DNA damage. Together, these data suggest that heterochromatin formation is essential for normal DNA replication or repair.

Indexed as

Chromosomes, FungalDNA, FungalFungal ProteinsHeterochromatinHistonesMethylationNeurospora crassaProtein Processing, Post-TranslationalDNA, FungalFungal ProteinsHeterochromatinHistones

Identifiers

PMID24879124
PMCPMC4135800
OpenAlexW2095953301

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.