Evidence map›Paper›PMID 24878061›Full record

ArticleJournal of molecular biology2014

Specific inhibition of p97/VCP ATPase and kinetic analysis demonstrate interaction between D1 and D2 ATPase domains.

Tsui-Fen Chou, Stacie L Bulfer, Conrad C Weihl, Kelin Li, Lev G Lis, Michael A Walters, Frank J Schoenen, Henry J Lin, Raymond J Deshaies, Michelle R Arkin

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 118 citations in OpenAlex.

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  5. A genome-scale drug discovery pipeline uncovers therapeutic targets and a unique p97 allosteric binding site inProceedings of the National Academy of Sciences of the United States of America · 2025
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  19. Bcs1, a novel target for fungicide.Frontiers in chemistry · 2023
    Review
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Tsui-Fen ChouDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center and Los Angeles Biomedical Research Institute, Torrance, CA 90502, USA. Electronic address: tsuifenchou@ucla.edu.
Stacie L BulferDepartment of Pharmaceutical Chemistry, Small Molecule Discovery Center, University of California, San Francisco, CA 94158, USA.
Conrad C WeihlDepartment of Neurology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Kelin LiSpecialized Chemistry Center, University of Kansas, Lawrence, KS 66047, USA.
Lev G LisDepartment of Medicinal Chemistry, Institute for Therapeutics Discovery and Development, College of Pharmacy, University of Minnesota, Minneapolis, MN 55414, USA.
Michael A WaltersDepartment of Medicinal Chemistry, Institute for Therapeutics Discovery and Development, College of Pharmacy, University of Minnesota, Minneapolis, MN 55414, USA.
Frank J SchoenenSpecialized Chemistry Center, University of Kansas, Lawrence, KS 66047, USA.
Henry J LinDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center and Los Angeles Biomedical Research Institute, Torrance, CA 90502, USA.
Raymond J DeshaiesDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815-6789, USA.
Michelle R ArkinDepartment of Pharmaceutical Chemistry, Small Molecule Discovery Center, University of California, San Francisco, CA 94158, USA.
The Lundquist Institute · USUniversity of California, San Francisco · USUniversity of Kansas · USUniversity of Minnesota · USCalifornia Institute of Technology · USWashington University in St. Louis · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
University of Kansas Specialized Chemistry CenterU54HG005031 · NHGRI · UNIVERSITY OF KANSAS LAWRENCE · PI AUBE, JEFFREY · 2008 to 2013
$21.5M
VCP in myopathy and dementiaR01AG031867 · NIA · WASHINGTON UNIVERSITY · PI CONRAD C WEIHL · 2009 to 2026
$9.1M
AUTOPHAGIC DYSFUNCTION IN IBMPFD ASSOCIATED MUSCLE DISEASEK02AG042095 · NIA · WASHINGTON UNIVERSITY · PI WEIHL, CONRAD C · 2012 to 2016
$671k
CCR NIH HHS HHSN261200800001CHoward Hughes Medical InstituteNCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1TR000124NCI NIH HHS HHSN261200800001ENHGRI NIH HHS U54 HG005031NHGRI NIH HHS U54HG005031NIA NIH HHS K02 AG042095NIA NIH HHS R01 AG031867PHS HHS 261200800001E
6 · The paper itself

Abstract

The p97 AAA (ATPase associated with diverse cellular activities), also called VCP (valosin-containing protein), is an important therapeutic target for cancer and neurodegenerative diseases. p97 forms a hexamer composed of two AAA domains (D1 and D2) that form two stacked rings and an N-terminal domain that binds numerous cofactor proteins. The interplay between the three domains in p97 is complex, and a deeper biochemical understanding is needed in order to design selective p97 inhibitors as therapeutic agents. It is clear that the D2 ATPase domain hydrolyzes ATP in vitro, but whether D1 contributes to ATPase activity is controversial. Here, we use Walker A and B mutants to demonstrate that D1 is capable of hydrolyzing ATP and show for the first time that nucleotide binding in the D2 domain increases the catalytic efficiency (kcat/Km) of D1 ATP hydrolysis 280-fold, by increasing kcat 7-fold and decreasing Km about 40-fold. We further show that an ND1 construct lacking D2 but including the linker between D1 and D2 is catalytically active, resolving a conflict in the literature. Applying enzymatic observations to small-molecule inhibitors, we show that four p97 inhibitors (DBeQ, ML240, ML241, and NMS-873) have differential responses to Walker A and B mutations, to disease-causing IBMPFD mutations, and to the presence of the N domain binding cofactor protein p47. These differential effects provide the first evidence that p97 cofactors and disease mutations can alter p97 inhibitor potency and suggest the possibility of developing context-dependent inhibitors of p97.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateBinding, CompetitiveEnzyme InhibitorsFrontotemporal DementiaHumansHydrolysisKineticsMutationNuclear ProteinsProtein BindingProtein Structure, TertiarySurface Plasmon ResonanceAdenosine TriphosphatasesAdenosine TriphosphateEnzyme InhibitorsNuclear Proteinsp97 ATPaseIBMPFD/ALSp97 inhibitorp97/VCP AAA ATPaseSPRsteady-state kinetics

Identifiers

PMID24878061
PMCPMC4102644
OpenAlexW2079939478

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.