Evidence map›Paper›PMID 24876384›Full record

ArticleThe Journal of biological chemistry2014

Robustness of the rotary catalysis mechanism of F1-ATPase.

Rikiya Watanabe, Yuki Matsukage, Ayako Yukawa, Kazuhito V Tabata, Hiroyuki Noji

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. High-throughput mutational analysis of FProtein science : a publication of the Protein Society · 2026
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  5. The FPhotosynthesis research · 2017
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Rikiya WatanabeFrom the Department of Applied Chemistry, University of Tokyo, PRESTO, Japan Science and Technology Agency, Bunkyo-ku, Tokyo 113-8656, and.
Yuki Matsukagethe Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka 567-0047, Japan.
Ayako YukawaFrom the Department of Applied Chemistry, University of Tokyo.
Kazuhito V TabataFrom the Department of Applied Chemistry, University of Tokyo, PRESTO, Japan Science and Technology Agency, Bunkyo-ku, Tokyo 113-8656, and.
Hiroyuki NojiFrom the Department of Applied Chemistry, University of Tokyo, hnoji@appchem.t.u-tokyo.ac.jp.
The University of Tokyo · JPJapan Science and Technology Agency · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

F1-ATPase (F1) is the rotary motor protein fueled by ATP hydrolysis. Previous studies have suggested that three charged residues are indispensable for catalysis of F1 as follows: the P-loop lysine in the phosphate-binding loop, GXXXXGK(T/S); a glutamic acid that activates water molecules for nucleophilic attack on the γ-phosphate of ATP (general base); and an arginine directly contacting the γ-phosphate (arginine finger). These residues are well conserved among P-loop NTPases. In this study, we investigated the role of these charged residues in catalysis and torque generation by analyzing alanine-substituted mutants in the single-molecule rotation assay. Surprisingly, all mutants continuously drove rotary motion, even though the rotational velocity was at least 100,000 times slower than that of wild type. Thus, although these charged residues contribute to highly efficient catalysis, they are not indispensable to chemo-mechanical energy coupling, and the rotary catalysis mechanism of F1 is far more robust than previously thought.

Indexed as

Adenosine TriphosphateCatalysisEscherichia coliEscherichia coli ProteinsProtein Structure, SecondaryProton-Translocating ATPasesAdenosine TriphosphateEscherichia coli ProteinsProton-Translocating ATPasesATP SynthaseBioenergeticsF1FO-ATPaseMolecular MotorSingle-molecule Biophysics

Identifiers

PMID24876384
PMCPMC4094045
OpenAlexW2059959965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.