Evidence map›Paper›PMID 24875049›Full record

ArticlePLoS genetics2014

Ras-mediated deregulation of the circadian clock in cancer.

Angela Relógio, Philippe Thomas, Paula Medina-Pérez, Silke Reischl, Sander Bervoets, Ewa Gloc, Pamela Riemer, Shila Mang-Fatehi, Bert Maier, Reinhold Schäfer and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed, 2 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 2 syntheses or guidelines pooled it, 155 citations in OpenAlex.

  1. Pooled it
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  12. Integrative Computational Framework,bioRxiv : the preprint server for biology · 2024
    Article
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  15. The Relationship between Circadian Rhythm and Cancer Disease.International journal of molecular sciences · 2024
    Review
  16. Tumor circadian clock strength influences metastatic potential and predicts patient prognosis in luminal A breast cancer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Angela RelógioInstitute for Theoretical Biology, Charité - Universitätsmedizin and Humboldt-Universität zu Berlin, Berlin, Germany.
Philippe ThomasKnowledge Management in Bioinformatics, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin, Germany.
Paula Medina-PérezLaboratory of Molecular Tumor Pathology, Charité - Universitätsmedizin Berlin, Berlin, Germany; Laboratory of Chronobiology, Institute for Medical Immunology Charité - Universitätsmedizin Berlin, Berlin, Germany.
Silke ReischlLaboratory of Chronobiology, Institute for Medical Immunology Charité - Universitätsmedizin Berlin, Berlin, Germany.
Sander BervoetsInstitute for Theoretical Biology, Charité - Universitätsmedizin and Humboldt-Universität zu Berlin, Berlin, Germany.
Ewa GlocLaboratory of Molecular Tumor Pathology, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Pamela RiemerLaboratory of Molecular Tumor Pathology, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Shila Mang-FatehiLaboratory of Molecular Tumor Pathology, Charité - Universitätsmedizin Berlin, Berlin, Germany.
Bert MaierLaboratory of Chronobiology, Institute for Medical Immunology Charité - Universitätsmedizin Berlin, Berlin, Germany.
Reinhold SchäferLaboratory of Molecular Tumor Pathology, Charité - Universitätsmedizin Berlin, Berlin, Germany; German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany.
Ulf LeserKnowledge Management in Bioinformatics, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin, Germany.
Hanspeter HerzelInstitute for Theoretical Biology, Charité - Universitätsmedizin and Humboldt-Universität zu Berlin, Berlin, Germany.
Achim KramerLaboratory of Chronobiology, Institute for Medical Immunology Charité - Universitätsmedizin Berlin, Berlin, Germany.
Christine SersLaboratory of Molecular Tumor Pathology, Charité - Universitätsmedizin Berlin, Berlin, Germany; German Cancer Consortium (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany.
Charité - Universitätsmedizin Berlin · DEHumboldt-Universität zu Berlin · DEHeidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circadian rhythms are essential to the temporal regulation of molecular processes in living systems and as such to life itself. Deregulation of these rhythms leads to failures in biological processes and eventually to the manifestation of pathological phenotypes including cancer. To address the questions as to what are the elicitors of a disrupted clock in cancer, we applied a systems biology approach to correlate experimental, bioinformatics and modelling data from several cell line models for colorectal and skin cancer. We found strong and weak circadian oscillators within the same type of cancer and identified a set of genes, which allows the discrimination between the two oscillator-types. Among those genes are IFNGR2, PITX2, RFWD2, PPARγ, LOXL2, Rab6 and SPARC, all involved in cancer-related pathways. Using a bioinformatics approach, we extended the core-clock network and present its interconnection to the discriminative set of genes. Interestingly, such gene signatures link the clock to oncogenic pathways like the RAS/MAPK pathway. To investigate the potential impact of the RAS/MAPK pathway - a major driver of colorectal carcinogenesis - on the circadian clock, we used a computational model which predicted that perturbation of BMAL1-mediated transcription can generate the circadian phenotypes similar to those observed in metastatic cell lines. Using an inducible RAS expression system, we show that overexpression of RAS disrupts the circadian clock and leads to an increase of the circadian period while RAS inhibition causes a shortening of period length, as predicted by our mathematical simulations. Together, our data demonstrate that perturbations induced by a single oncogene are sufficient to deregulate the mammalian circadian clock.

Indexed as

Cell Line, TumorCircadian ClocksColorectal NeoplasmsGene Expression Regulation, NeoplasticHumansMitogen-Activated Protein Kinase KinasesProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras ProteinsSignal TransductionSkin NeoplasmsKRAS protein, humanMitogen-Activated Protein Kinase KinasesProto-Oncogene ProteinsProto-Oncogene Proteins p21(ras)ras Proteins

Identifiers

PMID24875049
PMCPMC4038477
OpenAlexW1998478329

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.