Evidence map›Paper›PMID 24874988›Full record

ArticleGenes & development2014

How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes.

J Christian Pérez, Polly M Fordyce, Matthew B Lohse, Victor Hanson-Smith, Joseph L DeRisi, Alexander D Johnson

Abstract read
In one paragraph

Article in Genes & development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. A conserved ARF-DNA interface underlies auxin-triggered transcriptional response.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
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  5. Article
  6. Article
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  8. GAL Regulon in the YeastFrontiers in molecular biosciences · 2022
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

J Christian PérezDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94102, USA;
Polly M FordyceDepartment of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, California 94102, USA; Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.
Matthew B LohseDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94102, USA;
Victor Hanson-SmithDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94102, USA;
Joseph L DeRisiDepartment of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, California 94102, USA; Howard Hughes Medical Institute, Chevy Chase, Maryland 20815, USA.
Alexander D JohnsonDepartment of Microbiology and Immunology, University of California at San Francisco, San Francisco, California 94102, USA; Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, California 94102, USA;

Funding

Regulatory Circuits and Virulence in Candida albicansR01AI049187 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 2001 to 2021
$13.1M
Using Microfluidic Affinity Analysis to Probe Transcriptional RegulationK99GM099848 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FORDYCE, POLLY MORRELL · 2012 to 2013
$178k
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI049187NIGMS NIH HHS 5K99GM099848NIGMS NIH HHS K99 GM099848
6 · The paper itself

Abstract

The duplication of transcription regulators can elicit major regulatory network rearrangements over evolutionary timescales. However, few examples of duplications resulting in gene network expansions are understood in molecular detail. Here we show that four Candida albicans transcription regulators that arose by successive duplications have differentiated from one another by acquiring different intrinsic DNA-binding specificities, different preferences for half-site spacing, and different associations with cofactors. The combination of these three mechanisms resulted in each of the four regulators controlling a distinct set of target genes, which likely contributed to the adaption of this fungus to its human host. Our results illustrate how successive duplications and diversification of an ancestral transcription regulator can underlie major changes in an organism's regulatory circuitry.

Indexed as

Evolution, MolecularGene DuplicationAnimalsCandida albicansGene Expression RegulationGenes, FungalHost-Pathogen InteractionsHumansMinichromosome Maintenance 1 ProteinPhylogenyProtein BindingTranscription FactorsMinichromosome Maintenance 1 ProteinTranscription FactorsCandida albicansgene duplicationgene regulationmolecular evolutionregulatory networkstranscription regulator

Identifiers

PMID24874988
PMCPMC4066398

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.