Evidence map›Paper›PMID 24874881›Full record

ArticlePLoS genetics2014

The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast.

Scott P Kallgren, Stuart Andrews, Xavier Tadeo, Haitong Hou, James J Moresco, Patricia G Tu, John R Yates, Peter L Nagy, Songtao Jia

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  8. Isolation of mutant alleles of the U6 snRNA mmicroPublication biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Scott P KallgrenDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Stuart AndrewsDepartment of Pathology and Cell Biology, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.
Xavier TadeoDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Haitong HouDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
James J MorescoDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California, United States of America.
Patricia G TuDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California, United States of America.
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, California, United States of America.
Peter L NagyDepartment of Pathology and Cell Biology, Columbia University College of Physicians and Surgeons, New York, New York, United States of America.
Songtao JiaDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Columbia University · USScripps Research Institute · US

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Mechanism of heterochromatin assemblyR01GM085145 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JIA, SONGTAO · 2008 to 2017
$3.0M
Pathogenesis of Neurodegenerative Diseases Caused by Mutations in SenataxinR01NS064253 · NINDS · UNIVERSITY OF IOWA · PI NAGY, PETER L · 2008 to 2011
$1.5M
NCRR NIH HHS P41 RR011823NCRR NIH HHS P41-RR011823NIGMS NIH HHS P41 GM103533NIGMS NIH HHS P41-GM103533NIGMS NIH HHS R01 GM085145NIGMS NIH HHS R01-GM085145NIGMS NIH HHS T32 GM008798NIGMS NIH HHS T32-GM008798NINDS NIH HHS R01 NS064253NINDS NIH HHS R01-NS064253
6 · The paper itself

Abstract

Heterochromatin preferentially assembles at repetitive DNA elements, playing roles in transcriptional silencing, recombination suppression, and chromosome segregation. The RNAi machinery is required for heterochromatin assembly in a diverse range of organisms. In fission yeast, RNA splicing factors are also required for pericentric heterochromatin assembly, and a prevailing model is that splicing factors provide a platform for siRNA generation independently of their splicing activity. Here, by screening the fission yeast deletion library, we discovered four novel splicing factors that are required for pericentric heterochromatin assembly. Sequencing total cellular RNAs from the strongest of these mutants, cwf14Δ, showed intron retention in mRNAs of several RNAi factors. Moreover, introducing cDNA versions of RNAi factors significantly restored pericentric heterochromatin in splicing mutants. We also found that mutations of splicing factors resulted in defective telomeric heterochromatin assembly and mis-splicing the mRNA of shelterin component Tpz1, and that replacement of tpz1+ with its cDNA partially rescued heterochromatin defects at telomeres in splicing mutants. Thus, proper splicing of RNAi and shelterin factors contributes to heterochromatin assembly at pericentric regions and telomeres.

Indexed as

RNA InterferenceCarrier ProteinsCentromereChromosome SegregationDNA-Binding ProteinsGene SilencingHeterochromatinRNA, MessengerRNA, Small InterferingRNA SplicingSchizosaccharomycesSchizosaccharomyces pombe ProteinsTelomereCarrier ProteinsDNA-Binding ProteinsHeterochromatinRNA, MessengerRNA, Small InterferingSchizosaccharomyces pombe ProteinsTpz1 protein, S pombe

Identifiers

PMID24874881
PMCPMC4038458
OpenAlexW2094264162

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.