Evidence map›Paper›PMID 24874195›Full record

ArticleVirus research2014

Genetic diversification of penaeid shrimp infectious myonecrosis virus between Indonesia and Brazil.

Sidrotun Naim, Judith K Brown, Max L Nibert

Open access · greenAbstract readComparative Study
In one paragraph

Article in Virus research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Sidrotun NaimDepartment of Microbiology & Immunobiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA; Center for Sustainable Aquaculture & Pathology Studies, Surya University, Banten 15810, Indonesia. Electronic address: sidrotun_naim@hms.harvard.edu.
Judith K BrownSchool of Plant Sciences, University of Arizona, 1140 E. South Campus Drive, Tucson, AZ 85721, USA. Electronic address: jbrown@ag.arizona.edu.
Max L NibertDepartment of Microbiology & Immunobiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA. Electronic address: mnibert@hms.harvard.edu.
Harvard University · USUniversity of Arizona · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious myonecrosis virus (IMNV) is a pathogen of penaeid shrimp, most notably the whiteleg shrimp Litopenaeus vannamei. First discovered in L. vannamei from Brazilian aquaculture farms in 2003, IMNV was additionally confirmed in L. vannamei from Indonesian farms in 2006 and has since been found in numerous provinces there. Only two complete sequences of IMNV strains have been reported to date, one strain from the Brazilian state of Piauí collected in 2003 and another from the Indonesian province of East Java collected in 2006. In this study, we determined the complete sequences of two additional Indonesian strains, one from Lampung province collected in 2011 and another from East Java province collected in 2012. We also determined partial sequences for six other strains to enhance phylogenetic comparisons, which have heretofore been limited by the small number of reported sequences, including only one for an Indonesian strain. The new results demonstrate clear genetic diversification of IMNV between Indonesia and Brazil, as well as within Indonesia. Analyses of conserved sequence motifs suggest a revised RNA pseudoknot prediction for ribosomal frameshifting.

Indexed as

Genetic VariationGenome, ViralSequence Analysis, DNAAnimalsBrazilCluster AnalysisIndonesiaMolecular Sequence DataPenaeidaePhylogenyRNA, ViralSequence HomologyTotiviridaeRNA, Viral2A-like motifArthropod virusdsRNA virusRibosomal frameshiftingShrimp virusTotiviridae

Identifiers

PMID24874195
PMCPMC7114510
OpenAlexW2164782189

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.