Evidence map›Paper›PMID 24872595›Full record

ArticleMolecular & cellular proteomics : MCP2014

Profiling the secretome and extracellular proteome of the potato late blight pathogen Phytophthora infestans.

Harold J G Meijer, Francesco M Mancuso, Guadalupe Espadas, Michael F Seidl, Cristina Chiva, Francine Govers, Eduard Sabidó

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Pathogen-inspired engineering of plant protease enhances late blight resistance.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Profiling the Genomes and Secreted Effector Proteins inJournal of fungi (Basel, Switzerland) · 2025
    Article
  5. Application of Proteomic Methods in Oomycete Biology.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  6. Carbon and Nitrogen Sources Influence Parasitic Responsiveness inJournal of fungi (Basel, Switzerland) · 2024
    Article
  7. Review
  8. Review
  9. Genome analysis ofFrontiers in microbiology · 2023
    Article
  10. The root pathogenFrontiers in plant science · 2023
    Article
  11. Article
  12. Secretome Analysis ofFrontiers in microbiology · 2022
    Article
  13. Chromosome-level assembly of theFrontiers in microbiology · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Harold J G MeijerFrom the ‡Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands;
Francesco M Mancuso§Proteomics Unit, Center of Genomics Regulation (CRG), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain; ¶Proteomics Unit, Universitat Pompeu Fabra (UPF), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain;
Guadalupe Espadas§Proteomics Unit, Center of Genomics Regulation (CRG), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain; ¶Proteomics Unit, Universitat Pompeu Fabra (UPF), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain;
Michael F SeidlFrom the ‡Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; ‖Centre for BioSystems Genomics, Droevendaalsesteeg, 16708 PB Wageningen, The Netherlands.
Cristina Chiva§Proteomics Unit, Center of Genomics Regulation (CRG), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain; ¶Proteomics Unit, Universitat Pompeu Fabra (UPF), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain;
Francine GoversFrom the ‡Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; ‖Centre for BioSystems Genomics, Droevendaalsesteeg, 16708 PB Wageningen, The Netherlands.
Eduard Sabidó§Proteomics Unit, Center of Genomics Regulation (CRG), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain; ¶Proteomics Unit, Universitat Pompeu Fabra (UPF), Carrer Dr. Aiguader 88, 08003 Barcelona, Spain; eduard.sabido@crg.cat.
Centre for Genomic Regulation · ESWageningen University & Research · NLBarcelona Biomedical Research Park · ESCentre for BioSystems Genomics · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oomycetes are filamentous organisms that cause notorious diseases, several of which have a high economic impact. Well known is Phytophthora infestans, the causal agent of potato late blight. Previously, in silico analyses of the genome and transcriptome of P. infestans resulted in the annotation of a large number of genes encoding proteins with an N-terminal signal peptide. This set is collectively referred to as the secretome and comprises proteins involved in, for example, cell wall growth and modification, proteolytic processes, and the promotion of successful invasion of plant cells. So far, proteomic profiling in oomycetes was primarily focused on subcellular, intracellular or cell wall fractions; the extracellular proteome has not been studied systematically. Here we present the first comprehensive characterization of the in vivo secretome and extracellular proteome of P. infestans. We have used mass spectrometry to analyze P. infestans proteins present in seven different growth media with mycelial cultures and this resulted in the consistent identification of over two hundred proteins. Gene ontology classification pinpointed proteins involved in cell wall modifications, pathogenesis, defense responses, and proteolytic processes. Moreover, we found members of the RXLR and CRN effector families as well as several proteins lacking an obvious signal peptide. The latter were confirmed to be bona fide extracellular proteins and this suggests that, similar to other organisms, oomycetes exploit non-conventional secretion mechanisms to transfer certain proteins to the extracellular environment.

Indexed as

Cell WallCulture MediaDatabases, ProteinMass SpectrometryPhosphorylationPhytophthora infestansProteomicsProtozoan ProteinsCulture MediaProtozoan Proteins

Identifiers

PMID24872595
PMCPMC4125740
OpenAlexW2154882236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.