Evidence map›Paper›PMID 24871807›Full record

ArticleJournal of human genetics2014

A novel splicing silencer generated by DMD exon 45 deletion junction could explain upstream exon 44 skipping that modifies dystrophinopathy.

Ery Kus Dwianingsih, Rusdy Ghazali Malueka, Atsushi Nishida, Kyoko Itoh, Tomoko Lee, Mariko Yagi, Kazumoto Iijima, Yasuhiro Takeshima, Masafumi Matsuo

Open access · bronzeAbstract readCase Reports
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In one paragraph

Article in Journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  9. Mutation spectrum analysis ofF1000Research · 2022
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  13. Article
  14. Genetic modifiers of respiratory function in Duchenne muscular dystrophy.Annals of clinical and translational neurology · 2020
    Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ery Kus DwianingsihDepartment of Pediatrics, Graduate School of Medicine, Kobe University, Kobe, Japan.
Rusdy Ghazali MaluekaDepartment of Medical Rehabilitation, Faculty of Rehabilitation, Kobegakuin University, Kobe, Japan.
Atsushi NishidaDepartment of Medical Rehabilitation, Faculty of Rehabilitation, Kobegakuin University, Kobe, Japan.
Kyoko ItohDepartment of Pathology and Applied Neurobiology, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Tomoko LeeDepartment of Pediatrics, Graduate School of Medicine, Kobe University, Kobe, Japan.
Mariko YagiDepartment of Pediatrics, Graduate School of Medicine, Kobe University, Kobe, Japan.
Kazumoto IijimaDepartment of Pediatrics, Graduate School of Medicine, Kobe University, Kobe, Japan.
Yasuhiro TakeshimaDepartment of Pediatrics, Graduate School of Medicine, Kobe University, Kobe, Japan.
Masafumi MatsuoDepartment of Medical Rehabilitation, Faculty of Rehabilitation, Kobegakuin University, Kobe, Japan.
Kobe University · JPKobe Gakuin University · JPKyoto Prefectural University of Medicine · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Duchenne muscular dystrophy (DMD), a progressive muscle-wasting disease, is mostly caused by exon deletion mutations in the DMD gene. The reading frame rule explains that out-of-frame deletions lead to muscle dystrophin deficiency in DMD. In outliers to this rule, deletion junction sequences have never previously been explored as splicing modulators. In a Japanese case, we identified a single exon 45 deletion in the patient's DMD gene, indicating out-of-frame mutation. However, immunohistochemical examination disclosed weak dystrophin signals in his muscle. Reverse transcription-PCR amplification of DMD exons 42 to 47 revealed a major normally spliced product with exon 45 deletion and an additional in-frame product with deletion of both exons 44 and 45, indicating upstream exon 44 skipping. We considered the latter to underlie the observed dystrophin expression. Remarkably, the junction sequence cloned by PCR walking abolished the splicing enhancer activity of the upstream intron in a chimeric doublesex gene pre-mRNA in vitro splicing. Furthermore, antisense oligonucleotides directed against the junction site counteracted this effect. These indicated that the junction sequence was a splicing silencer that induced upstream exon 44 skipping. It was strongly suggested that creation of splicing regulator is a modifier of dystrophinopathy.

Indexed as

Base SequenceChildDystrophinExonsFrameshift MutationHumansImmunohistochemistryMaleMolecular Sequence DataMuscle, SkeletalMuscular Dystrophy, DuchenneNucleotide MotifsOligonucleotides, AntisensePhenotypeReal-Time Polymerase Chain ReactionRNA, MessengerDystrophinOligonucleotides, AntisenseRNA, MessengerRNA Precursors

Identifiers

PMID24871807
OpenAlexW2056525949

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.