Evidence map›Paper›PMID 24871270›Full record

ArticleBiochemistry2014

Solution structure and molecular determinants of hemoglobin binding of the first NEAT domain of IsdB in Staphylococcus aureus.

Brittany A Fonner, Brian P Tripet, Brian J Eilers, Jessica Stanisich, Rose K Sullivan-Springhetti, Rebecca Moore, Mengyao Liu, Benfang Lei, Valérie Copié

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Cryo-EM provides insight into how thebioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Cryo-EM structures of staphylococcal IsdB bound to human hemoglobin reveal the process of heme extraction.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. HumanmBio · 2019
    Article
  10. Article
  11. TheThe Journal of biological chemistry · 2018
    Article
  12. Energetics underlying hemin extraction from human hemoglobin byThe Journal of biological chemistry · 2018
    Article
  13. Article
  14. Structure-function analyses reveal key features inThe Journal of biological chemistry · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Heme Synthesis and Acquisition in Bacterial Pathogens.Journal of molecular biology · 2016
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Brittany A FonnerDepartment of Chemistry and Biochemistry, Montana State University , 103 Chemistry and Biochemistry Building, PO Box 173400, Bozeman, Montana 59717-3400, United States.
Brian P Tripet
Brian J Eilers
Jessica Stanisich
Rose K Sullivan-Springhetti
Rebecca Moore
Mengyao Liu
Benfang Lei
Valérie Copié

Funding

Pilot Grants ProgramP30GM110732 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI JUTILA, MARK A · 2014 to 2018
$5.4M
Center for Zoonotic and Emerging Infectious DiseasesP20GM103500 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI QUINN, MARK T · 2012 to 2013
$4.2M
Evasion of Innate Immunity by Group A StreptococcusR01AI095704 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI LEI, BENFANG · 2012 to 2016
$1.8M
Acquisition of a 600 MHz NMR cryoprobe and 600 MHz spectrometer console upgradeS10RR026659 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI COPIE, VALERIE · 2011 to 2011
$600k
Vaccine and therapeutic antibodies against Group A StreptococcusR21AI097703 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI LEI, BENFANG · 2012 to 2013
$385k
NCRR NIH HHS S10 RR026659NIAID NIH HHS AI095704NIAID NIH HHS AI097703NIAID NIH HHS R01 AI095704NIAID NIH HHS R21 AI097703NIGMS NIH HHS GM103500-09NIGMS NIH HHS P20 GM103500NIGMS NIH HHS P20 GM 104935-06A1NIGMS NIH HHS P30 GM110732
6 · The paper itself

Abstract

The human pathogen Staphylococcus aureus acquires heme iron from hemoglobin (Hb) via the action of a series of iron-regulated surface determinant (Isd) proteins. The cell wall anchored IsdB protein is recognized as the predominant Hb receptor, and is comprised of two NEAr transporter (NEAT) domains that act in concert to bind, extract, and transfer heme from Hb to downstream Isd proteins. Structural details of the NEAT 2 domain of IsdB have been investigated, but the molecular coordination between NEAT 2 and NEAT 1 to extract heme from hemoglobin has yet to be characterized. To obtain a more complete understanding of IsdB structure and function, we have solved the 3D solution structure of the NEAT 1 domain of IsdB (IsdB(N1)) spanning residues 125-272 of the full-length protein by NMR. The structure reveals a canonical NEAT domain fold and has particular structural similarity to the NEAT 1 and NEAT 2 domains of IsdH, which also interact with Hb. IsdB(N1) is also comprised of a short N-terminal helix, which has not been previously observed in other NEAT domain structures. Interestingly, the Hb binding region (loop 2 of IsdB(N1)) is disordered in solution. Analysis of Hb binding demonstrates that IsdB(N1) can bind metHb weakly and the affinity of this interaction is further increased by the presence of IsdB linker domain. IsdB(N1) loop 2 variants reveal that phenylalanine 164 (F164) of IsdB is necessary for Hb binding and rapid heme transfer from metHb to IsdB. Together, these findings provide a structural role for IsdB(N1) in enhancing the rate of extraction of metHb heme by the IsdB NEAT 2 domain.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceAntigens, BacterialCation Transport ProteinsHemeHemoglobinsMethemoglobinNuclear Magnetic Resonance, BiomolecularPhenylalanineReceptors, Cell SurfaceStaphylococcus aureusAntigens, BacterialCation Transport ProteinsdeoxyhemoglobinHemeHemoglobinsIsdB protein, Staphylococcus aureusIsdH protein, Staphylococcus aureusMethemoglobinPhenylalanineReceptors, Cell Surface

Identifiers

PMID24871270
PMCPMC4072347

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.