Evidence map›Paper›PMID 24870238›Full record

ArticleNature2014

RLIM is dispensable for X-chromosome inactivation in the mouse embryonic epiblast.

JongDae Shin, Mary C Wallingford, Judith Gallant, Chelsea Marcho, Baowei Jiao, Meg Byron, Michael Bossenz, Jeanne B Lawrence, Stephen N Jones, Jesse Mager and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genome research · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Roles of the Rlim-Rex1 axis during X chromosome inactivation in mice.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Review
  12. Knockout ofAnimals : an open access journal from MDPI · 2023
    Article
  13. Article
  14. Gene regulation in time and space during X-chromosome inactivation.Nature reviews. Molecular cell biology · 2022
    Review
  15. Review
  16. Article
  17. Revisiting the consequences of deleting the X inactivation center.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

JongDae ShinProgram in Gene Function and Expression, University of Massachusetts Medical School (UMMS), Worcester, Massachusetts 01605, USA.
Mary C WallingfordVeterinary & Animal Sciences, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.
Judith GallantDepartment of Cell and Developmental Biology, UMMS, Worcester, Massachusetts 01605, USA.
Chelsea MarchoVeterinary & Animal Sciences, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.
Baowei Jiao1] Program in Gene Function and Expression, University of Massachusetts Medical School (UMMS), Worcester, Massachusetts 01605, USA [2] Kunming Institute of Zoology, Chinese Academy of Science, Kunming 650223, China.
Meg ByronDepartment of Cell and Developmental Biology, UMMS, Worcester, Massachusetts 01605, USA.
Michael BossenzOrtenau Klinikum Lahr-Ettenheim, Institut für Pathologie, 77933 Lahr, Germany.
Jeanne B LawrenceDepartment of Cell and Developmental Biology, UMMS, Worcester, Massachusetts 01605, USA.
Stephen N JonesDepartment of Cell and Developmental Biology, UMMS, Worcester, Massachusetts 01605, USA.
Jesse MagerVeterinary & Animal Sciences, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.
Ingolf Bach1] Program in Gene Function and Expression, University of Massachusetts Medical School (UMMS), Worcester, Massachusetts 01605, USA [2] Program in Molecular Medicine, UMMS, Worcester, Massachusetts 01605, USA.
University of Massachusetts Chan Medical School · USUniversity of Massachusetts Amherst · USKunming Institute of Zoology · CNOrtenau Klinikum · DE

Funding

PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
The Role of MDM Proteins in Cell Growth and TumorigenesisR01CA077735 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI JONES, STEPHEN, ZHANG, HONG · 1999 to 2019
$5.7M
XIST RNA: A Key to Understand Epigenome Regulation and Chromosome StructureR01GM053234 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LAWRENCE, JEANNE BENTLEY · 1996 to 2017
$5.1M
Roles of LIM cofactors for regulating ERalpha during oncogenesis and developmentR01CA131158 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BACH, INGOLF M · 2008 to 2017
$3.3M
The Role of MDM Proteins in Cell Growth and TumorigenesisR56CA077735 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI JONES, STEPHEN · 2009 to 2009
$324k
NCI NIH HHS CA077735NCI NIH HHS CA131158NCI NIH HHS R01 CA077735NCI NIH HHS R01 CA131158NCI NIH HHS R56 CA077735NIDDK NIH HHS DK32520NIDDK NIH HHS P30 DK032520NIGMS NIH HHS GM053234NIGMS NIH HHS R01 GM053234
6 · The paper itself

Abstract

In female mice, two forms of X-chromosome inactivation (XCI) ensure the selective silencing of female sex chromosomes during mouse embryogenesis. Beginning at the four-cell stage, imprinted XCI (iXCI) exclusively silences the paternal X chromosome. Later, around implantation, epiblast cells of the inner cell mass that give rise to the embryo reactivate the paternal X chromosome and undergo a random form of XCI (rXCI). Xist, a long non-coding RNA crucial for both forms of XCI, is activated by the ubiquitin ligase RLIM (also known as Rnf12). Although RLIM is required for triggering iXCI in mice, its importance for rXCI has been controversial. Here we show that RLIM levels are downregulated in embryonic cells undergoing rXCI. Using mouse genetics we demonstrate that female cells lacking RLIM from pre-implantation stages onwards show hallmarks of XCI, including Xist clouds and H3K27me3 foci, and have full embryogenic potential. These results provide evidence that RLIM is dispensable for rXCI, indicating that in mice an RLIM-independent mechanism activates Xist in the embryo proper.

Indexed as

AnimalsDown-RegulationEmbryo ImplantationEmbryo, MammalianFemaleGerm LayersHistonesIn Situ Hybridization, FluorescenceLysineMethylationMiceMice, KnockoutRNA, Long NoncodingUbiquitin-Protein LigasesX Chromosome InactivationHistonesLysineRlim protein, mouseRNA, Long NoncodingUbiquitin-Protein LigasesXIST non-coding RNA

Identifiers

PMID24870238
PMCPMC4105192
OpenAlexW2033669828

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.