Evidence map›Paper›PMID 24870048›Full record

ArticleProceedings. Biological sciences2014

Genetic mapping of the rice resistance-breaking gene of the brown planthopper Nilaparvata lugens.

Tetsuya Kobayashi, Kimiko Yamamoto, Yoshitaka Suetsugu, Seigo Kuwazaki, Makoto Hattori, Jirapong Jairin, Sachiyo Sanada-Morimura, Masaya Matsumura

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 49 citations in OpenAlex.

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  6. UnveilingCurrent issues in molecular biology · 2023
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  20. Genotyping-by-sequencing (GBS) identified SNP tightly linked to QTL for pre-harvest sprouting resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Tetsuya KobayashiNational Institute of Agrobiological Sciences, 1-2, O-washi, Tsukuba, Ibaraki 305-8634, Japan ttkoba@affrc.go.jp.
Kimiko YamamotoNational Institute of Agrobiological Sciences, 1-2, O-washi, Tsukuba, Ibaraki 305-8634, Japan.
Yoshitaka SuetsuguNational Institute of Agrobiological Sciences, 1-2, O-washi, Tsukuba, Ibaraki 305-8634, Japan.
Seigo KuwazakiNational Institute of Agrobiological Sciences, 1-2, O-washi, Tsukuba, Ibaraki 305-8634, Japan.
Makoto HattoriNational Institute of Agrobiological Sciences, 1-2, O-washi, Tsukuba, Ibaraki 305-8634, Japan.
Jirapong JairinUbon Ratchathani Rice Research Center, PO Box 65, Muang, Ubon Ratchathani 34000, Thailand.
Sachiyo Sanada-MorimuraKyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Kumamoto 861-1192, Japan.
Masaya MatsumuraKyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization, Kumamoto 861-1192, Japan.
Institute of Agrobiological Sciences · JPKyushu Okinawa Agricultural Research Center · JPNational Agriculture and Food Research Organization · JPUbonRatchathani Rice Research Center · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Host plant resistance has been widely used for controlling the major rice pest brown planthopper (BPH, Nilaparvata lugens). However, adaptation of the wild BPH population to resistance limits the effective use of resistant rice varieties. Quantitative trait locus (QTL) analysis was conducted to identify resistance-breaking genes against the anti-feeding mechanism mediated by the rice resistance gene Bph1. QTL analysis in iso-female BPH lines with single-nucleotide polymorphism (SNP) markers detected a single region on the 10th linkage group responsible for the virulence. The QTL explained from 57 to 84% of the total phenotypic variation. Bulked segregant analysis with next-generation sequencing in F2 progenies identified five SNPs genetically linked to the virulence. These analyses showed that virulence to Bph1 was controlled by a single recessive gene. In contrast to previous studies, the gene-for-gene relationship between the major resistance gene Bph1 and virulence gene of BPH was confirmed. Identified markers are available for map-based cloning of the major gene controlling BPH virulence to rice resistance.

Indexed as

Chromosome MappingOryzaQuantitative Trait LociAnimalsFemaleGenetic LinkageHemipterabrown planthoppergene-for-gene interactionhost plant resistancequantitative trait locusrice

Identifiers

PMID24870048
PMCPMC4071553
OpenAlexW1995957474

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.