Evidence map›Paper›PMID 24869919›Full record

ArticleThe Biochemical journal2014

N-terminus of the protein kinase CLK1 induces SR protein hyperphosphorylation.

Brandon E Aubol, Ryan M Plocinik, Malik M Keshwani, Maria L McGlone, Jonathan C Hagopian, Gourisankar Ghosh, Xiang-Dong Fu, Joseph A Adams

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 60 citations in OpenAlex.

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  8. The early macrophage response to pathogens requires dynamic regulation of the nuclear paraspeckle.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  16. CLK1 reorganizes the splicing factor U1-70K for early spliceosomal protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Brandon E Aubol*Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Ryan M Plocinik*Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Malik M Keshwani*Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Maria L McGlone*Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Jonathan C Hagopian*Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Gourisankar Ghosh†Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Xiang-Dong Fu‡Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
Joseph A Adams*Department of Pharmacology, University of California, San Diego, La Jolla, CA 92093-0636, U.S.A.
University of California San Diego · US

Funding

GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
Clk Kinases and Splicing RegulationR01GM098528 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, JOSEPH · 2012 to 2019
$2.5M
Mechanism of SR Protein Binding to the Splicing Kinase SRPK1F32GM090484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PLOCINIK, RYAN MATTHEW · 2010 to 2011
$107k
NIGMS NIH HHS F32 GM090484NIGMS NIH HHS GM090484NIGMS NIH HHS GM98528NIGMS NIH HHS R01 GM098528NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

SR proteins are essential splicing factors that are regulated through multisite phosphorylation of their RS (arginine/serine-rich) domains by two major families of protein kinases. The SRPKs (SR-specific protein kinases) efficiently phosphorylate the arginine/serine dipeptides in the RS domain using a conserved docking groove in the kinase domain. In contrast, CLKs (Cdc2-like kinases) lack a docking groove and phosphorylate both arginine/serine and serine-proline dipeptides, modifications that generate a hyperphosphorylated state important for unique SR protein-dependent splicing activities. All CLKs contain long flexible N-terminal extensions (140-300 residues) that resemble the RS domains present in their substrate SR proteins. We showed that the N-terminus in CLK1 contacts both the kinase domain and the RS domain of the SR protein SRSF1 (SR protein splicing factor 1). This interaction not only is essential for facilitating hyperphosphorylation, but also induces co-operative binding of SRSF1 to RNA. The N-terminus of CLK1 enhances the total phosphoryl contents of a panel of physiological substrates including SRSF1, SRSF2, SRSF5 and Tra2β1 (transformer 2β1) by 2-3-fold. These findings suggest that CLK1-dependent hyperphosphorylation is the result of a general mechanism in which the N-terminus acts as a bridge connecting the kinase domain and the RS domain of the SR protein.

Indexed as

RNA SplicingAnimalsArginineHumansMiceNuclear ProteinsPhosphorylationProtein Serine-Threonine KinasesProtein Structure, TertiaryProtein-Tyrosine KinasesRNA-Binding ProteinsSerineSerine-Arginine Splicing FactorsSubstrate SpecificityArginineClk dual-specificity kinasesNuclear ProteinsProtein Serine-Threonine KinasesProtein-Tyrosine KinasesRNA-Binding ProteinsSerineSerine-Arginine Splicing Factors

Identifiers

PMID24869919
PMCPMC5056641
OpenAlexW2056401015

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.