ArticleGenome biology and evolution2014
Transcription of nuclear organellar DNA in a model plant system.
Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 23 citations in OpenAlex.
- Enhancement of Dendrobine Production by CRISPR/Act3.0-Mediated Transcriptional Activation of Multiple Endogenous Genes inInternational journal of molecular sciences · 2025Article
- Plastid DNA is a major source of nuclear genome complexity and of RNA genes in the orphan crop moringa.BMC plant biology · 2024Article
- Kozak Sequence Acts as a Negative Regulator for De Novo Transcription Initiation of Newborn Coding Sequences in the Plant Genome.Molecular biology and evolution · 2021Article
- A Repertory of Rearrangements and the Loss of an Inverted Repeat Region in Passiflora Chloroplast Genomes.Genome biology and evolution · 2020Article
- Pod-shattering characteristics differences between two groups of soybeans are associated with specific changes in gene expression.Functional & integrative genomics · 2020Article
- Deficiency of mitoribosomal S10 protein affects translation and splicing in Arabidopsis mitochondria.Nucleic acids research · 2019Article
- Intergenomic gene transfer in diploid and allopolyploid Gossypium.BMC plant biology · 2019Article
- Starch content differences between two sweet potato accessions are associated with specific changes in gene expression.Functional & integrative genomics · 2018Article
- The Roles of Mitochondrion in Intergenomic Gene Transfer in Plants: A Source and a Pool.International journal of molecular sciences · 2018Article
- Seed weight differences between wild and domesticated soybeans are associated with specific changes in gene expression.Plant cell reports · 2017Article
- Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants.The Plant journal : for cell and molecular biology · 2017Article
- Whole-Genome Sequencing Reveals a New Genospecies of Methylobacterium sp. GXS13, Isolated from Vitis vinifera L. Xylem Sap.Genome announcements · 2016Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Endosymbiotic gene transfer from cytoplasmic organelles (chloroplasts and mitochondria) to the nucleus is an ongoing process in land plants. Although the frequency of organelle DNA migration is high, functional gene transfer is rare because a nuclear promoter is thought necessary for activity in the nucleus. Here we show that a chloroplast promoter, 16S rrn, drives nuclear transcription, suggesting that a transferred organellar gene may become active without obtaining a nuclear promoter. Examining the chromatin status of a known de novo chloroplast integrant indicates that plastid DNA inserts into open chromatin and that this relaxed condition is maintained after integration. Transcription of nuclear organelle DNA integrants was explored at the whole genome level by analyzing RNA-seq data of Oryza sativa subsp. japonica, and utilizing sequence polymorphisms to unequivocally discriminate nuclear organelle DNA transcripts from those of bona fide cytoplasmic organelle DNA. Nuclear copies of organelle DNA that are transcribed show a spectrum of transcriptional activity but at comparatively low levels compared with the majority of other nuclear genes.
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