ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Evolutionary history of trihelix family and their functional diversification.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed, 90 citations in OpenAlex.
- The Regulatory Army of Plant Defense: Transcription Factors in the War for Plant Immunity.International journal of molecular sciences · 2026Review
- Genome-wide identification and characterization of the Trihelix transcription factor family and functional analysis of VaTrihelix23 under low temperatures stress in Vitis amurensis.BMC plant biology · 2025Article
- Genome-wide identification and expression analysis of trihelix transcription factor family in cucumber (Cucumis sativus L.) and their roles in biotic stress responses.BMC genomics · 2025Article
- Trihelix Transcription Factor OsTGS1 Regulates Grain Size and Weight in Rice.Rice (New York, N.Y.) · 2025Article
- Red peel regulator 1 links ethylene response factor 25 and β-citraurin biosynthetic genes to regulate ethylene-induced peel reddening in citrus.The Plant cell · 2024Article
- Genome-Wide Identification of the Trihelix Transcription Factor Family and Functional Analysis ofInternational journal of molecular sciences · 2024Article
- New insights into the evolution analysis of trihelix gene family in eggplant (Solanum melongena L.) and expression analysis under abiotic stress.BMC genomics · 2024Article
- E3 Ubiquitin Ligase PUB23 in Kiwifruit Interacts with Trihelix Transcription Factor GT1 and Negatively Regulates Immune Responses againstInternational journal of molecular sciences · 2024Article
- Genome-wide identification and expression analysis of the Trihelix transcription factor family in potato (PeerJ · 2024Article
- Comprehensive Genomic Analysis of Trihelix Family in Tea Plant (Plants (Basel, Switzerland) · 2023Article
- Genome-wide identification of trihelix transcription factors in the apple genome in silico.Journal of applied genetics · 2023Article
- Genome-wide characterization, evolutionary analysis, and expression pattern analysis of the trihelix transcription factor family and gene expression analysis under MeJA treatment in Panax ginseng.BMC plant biology · 2023Article
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- Overexpression of the cotton trihelix transcription factorFrontiers in plant science · 2023Article
- Conservation and Divergence of the Trihelix Genes in Brassica and Expression Profiles ofInternational journal of molecular sciences · 2022Article
- Trihelix Transcriptional Factor GhGT26 of Cotton Enhances Salinity Tolerance inPlants (Basel, Switzerland) · 2022Article
- Genome-wide characterization of the MBF1 gene family and its expression pattern in different tissues and stresses in Zanthoxylum armatum.BMC genomics · 2022Article
- Article
- Insights into the trihelix transcription factor responses to salt and other stresses in Osmanthus fragrans.BMC genomics · 2022Article
- Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, we carried out an evolutionary, transcriptional, and functional analyses of the trihelix transcription factor family. A total of 319 trihelix members, identified from 11 land plant species, were classified into five clades. The results of phylogeny indicate the binding domains of GT1 and GT2 diverged early in the existence of land plants. Genomic localization revealed that the trihelix family members were highly conserved among cereal species, even though some homeologs generated during the tetraploidy of maize were lost. Three-dimensional structural analyses and an examination of subcellular localization of this family supported the involvement of all five clades in transcriptional regulation. Furthermore, the family members from all clades in sorghum and rice showed a broad and dynamic expression pattern in response to abiotic stresses, indicating regulatory subfunctionalization of their original functions. This finding is further supported by the phenotypes of enhanced tolerance to cold, salt, and drought in transgenic plants overexpressing Sb06g023980 and Sb06g024110. In contrast, few Arobidopsis genes showed inducible expression under abiotic stress conditions, which may indicate a functional shift. Finally, our co-expression analysis points to the involvement of this family in various metabolic processes, implying their further functional divergence.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.