Evidence map›Paper›PMID 24862870›Full record

ArticleThe Journal of membrane biology2014

Amphipol-trapped ExbB-ExbD membrane protein complex from Escherichia coli: a biochemical and structural case study.

Aleksandr Sverzhinsky, Shuo Qian, Lin Yang, Marc Allaire, Isabel Moraes, Dewang Ma, Jacqueline W Chung, Manuela Zoonens, Jean-Luc Popot, James W Coulton

Abstract read
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In one paragraph

Article in The Journal of membrane biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure and Stoichiometry of the Ton Molecular Motor.International journal of molecular sciences · 2020
    Review
  4. Article
  5. Article
  6. Article
  7. Amphipols for each season.The Journal of membrane biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Aleksandr SverzhinskyDepartment of Microbiology and Immunology, McGill University, Montreal, H3A 2B4, QC, Canada.
Shuo Qian
Lin Yang
Marc Allaire
Isabel Moraes
Dewang Ma
Jacqueline W Chung
Manuela Zoonens
Jean-Luc Popot
James W Coulton
McGill University · CABrookhaven National Laboratory · USLaboratoire de Biologie Physico-Chimique des Protéines Membranaires · FROak Ridge National Laboratory · USResearch Complex at Harwell · GBUniversité de Montréal · CA

Funding

Canadian Institutes of Health Research 200709MOP-178048-BMA-CFAA-11449
6 · The paper itself

Abstract

Nutrient import across Gram-negative bacteria's outer membrane is powered by the proton-motive force, delivered by the cytoplasmic membrane protein complex ExbB-ExbD-TonB. Having purified the ExbB4-ExbD2 complex in the detergent dodecyl maltoside, we substituted amphipol A8-35 for detergent, forming a water-soluble membrane protein/amphipol complex. Properties of the ExbB4-ExbD2 complex in detergent or in amphipols were compared by gel electrophoresis, size exclusion chromatography, asymmetric flow field-flow fractionation, thermal stability assays, and electron microscopy. Bound detergent and fluorescently labeled amphipol were assayed quantitatively by 1D NMR and analytical ultracentrifugation, respectively. The structural arrangement of ExbB4-ExbD2 was examined by EM, small-angle X-ray scattering, and small-angle neutron scattering using a deuterated amphipol. The amphipol-trapped ExbB4-ExbD2 complex is slightly larger than its detergent-solubilized counterpart. We also investigated a different oligomeric form of the two proteins, ExbB6-ExbD4, and propose a structural arrangement of its transmembrane α-helical domains.

Indexed as

Bacterial Outer Membrane ProteinsBinding SitesEscherichia coliEscherichia coli ProteinsHydrophobic and Hydrophilic InteractionsMultiprotein ComplexesPolymersPropylaminesProtein BindingProtein ConformationSolubilitySurface-Active Agentsamphipol A8-35Bacterial Outer Membrane ProteinsEscherichia coli ProteinsExbB protein, E coliexbD protein, E coliMultiprotein ComplexesPolymersPropylaminesSurface-Active Agents

Identifiers

PMID24862870
OpenAlexW2149326970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.