Evidence map›Paper›PMID 24862283›Full record

ArticleJournal of molecular biology2015

Binding of ArgTX-636 in the NMDA receptor ion channel.

Mette H Poulsen, Jacob Andersen, Rune Christensen, Kasper B Hansen, Stephen F Traynelis, Kristian Strømgaard, Anders Skov Kristensen

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Mette H PoulsenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2100 København, Denmark.
Jacob AndersenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2100 København, Denmark.
Rune ChristensenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2100 København, Denmark.
Kasper B HansenDepartment of Pharmacology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Stephen F TraynelisDepartment of Pharmacology, Emory University School of Medicine, Atlanta, GA 30322, USA.
Kristian StrømgaardDepartment of Drug Design and Pharmacology, University of Copenhagen, 2100 København, Denmark.
Anders Skov KristensenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2100 København, Denmark. Electronic address: ask@sund.ku.dk.
University of Copenhagen · DKEmory University · US

Funding

Control of Glutamate Receptor FunctionR01NS036654 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 1998 to 2018
$3.7M
Control of glutamate receptor functionR37NS036654 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 2007 to 2013
$2.4M
NINDS NIH HHS NS036654NINDS NIH HHS R01 NS036654NINDS NIH HHS R37 NS036654
6 · The paper itself

Abstract

The N-methyl-d-aspartate receptors (NMDARs) constitute an important class of ligand-gated cation channels that are involved in the majority of excitatory neurotransmission in the human brain. Compounds that bind in the NMDAR ion channel and act as blockers are use- and voltage-dependent inhibitors of NMDAR activity and have therapeutic potential for treatment of a variety of brain diseases or as pharmacological tools for studies of the neurobiological role of NMDARs. We have performed a kinetic analysis of the blocking mechanism of the prototypical polyamine toxin NMDAR ion channel blocker argiotoxin-636 (ArgTX-636) at recombinant GluN1/2A receptors to provide detailed information on the mechanism of block. The predicted binding site of ArgTX-636 is in the pore region of the NMDAR ion channel formed by residues in the transmembrane M3 and the M2 pore-loop segments of the GluN1 and GluN2A subunits. To assess the predicted binding mode in further detail, we performed an alanine- and glycine-scanning mutational analysis of this pore-loop segment to systematically probe the role of pore-lining M2 residues in GluN1 and GluN2A in the channel block by ArgTX-636. Comparison of M2 positions in GluN1 and GluN2A where mutation influences ArgTX-636 potency suggests differential contribution of the M2-loops of GluN1 and GluN2A to binding of ArgTX-636. The results of the mutational analysis are highly relevant for the future structure-based development of argiotoxin-derived NMDAR channel blockers.

Indexed as

AnimalsBinding SitesElectrophysiologyGlutamic AcidHEK293 CellsHumansIndoleacetic AcidsIon ChannelsKineticsModels, MolecularMutagenesisMutationPatch-Clamp TechniquesPolyaminesProtein ConformationProtein Subunitsargiotoxin-636Glutamic AcidIndoleacetic AcidsIon ChannelsPolyaminesProtein SubunitsReceptors, N-Methyl-D-AspartateRecombinant Fusion ProteinsSpider Venomschannel blockelectrophysiologyglutamate receptormutational analysisNMDA receptor

Identifiers

PMID24862283
PMCPMC4864154
OpenAlexW1972899840

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.