Evidence map›Paper›PMID 24861623›Full record

ArticleNucleic acids research2014

Quantitative telomerase enzyme activity determination using droplet digital PCR with single cell resolution.

Andrew T Ludlow, Jerome D Robin, Mohammed Sayed, Claudia M Litterst, Dawne N Shelton, Jerry W Shay, Woodring E Wright

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 128 citations in OpenAlex.

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  14. Single-Cell Analysis of circRNA Using ddPCR.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Andrew T LudlowDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX 75390-9039, USA.
Jerome D RobinDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX 75390-9039, USA.
Mohammed SayedDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX 75390-9039, USA.
Claudia M LitterstBio-Rad Laboratories, Digital Biology Center, Pleasanton, CA 94566, USA.
Dawne N SheltonBio-Rad Laboratories, Digital Biology Center, Pleasanton, CA 94566, USA.
Jerry W ShayDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX 75390-9039, USA.
Woodring E WrightDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX 75390-9039, USA Woodring.Wright@UTSouthwestern.edu.
Southwestern Medical CenterBio-Rad (United States) · USSouthwestern Medical Center · USThe University of Texas Southwestern Medical Center · US

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI HEYMACH, JOHN V. · 1996 to 2024
$57.4M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
GENE EXPRESSION IN AGING AND DEVELOPMENTR01AG001228 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 1985 to 2018
$7.6M
Cancer Biology Training GrantT32CA124334 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 2007 to 2021
$5.3M
Manipulating telomerase alternative splicing for cancer therapyR01CA154805 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI WRIGHT, WOODRING ERIK · 2011 to 2015
$1.6M
GENE EXPRESSION IN AGING AND DEVELOPMENTR37AG001228 · NIA · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI WRIGHT, WOODRING ERIK · 1987 to 1996
–
NCI NIH HHS 5P30 CA142543-03NCI NIH HHS CA154805NCI NIH HHS P50 CA070907NCI NIH HHS P50CA70907NCI NIH HHS R01 CA154805NCI NIH HHS T32-CA124334-07NIA NIH HHS AG01228NIA NIH HHS R01 AG001228
6 · The paper itself

Abstract

The telomere repeat amplification protocol (TRAP) for the human reverse transcriptase, telomerase, is a PCR-based assay developed two decades ago and is still used for routine determination of telomerase activity. The TRAP assay can only reproducibly detect ∼ 2-fold differences and is only quantitative when compared to internal standards and reference cell lines. The method generally involves laborious radioactive gel electrophoresis and is not conducive to high-throughput analyzes. Recently droplet digital PCR (ddPCR) technologies have become available that allow for absolute quantification of input deoxyribonucleic acid molecules following PCR. We describe the reproducibility and provide several examples of a droplet digital TRAP (ddTRAP) assay for telomerase activity, including quantitation of telomerase activity in single cells, telomerase activity across several common telomerase positive cancer cells lines and in human primary peripheral blood mononuclear cells following mitogen stimulation. Adaptation of the TRAP assay to digital format allows accurate and reproducible quantification of the number of telomerase-extended products (i.e. telomerase activity; 57.8 ± 7.5) in a single HeLa cell. The tools developed in this study allow changes in telomerase enzyme activity to be monitored on a single cell basis and may have utility in designing novel therapeutic approaches that target telomerase.

Indexed as

AnimalsCell LineCell Line, TumorCells, CulturedElectrophoresis, Polyacrylamide GelEnzyme AssaysHeLa CellsHumansLymphocytesMicePolymerase Chain ReactionTelomeraseTelomerase

Identifiers

PMID24861623
PMCPMC4117742
OpenAlexW2057009728

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.