ArticleNucleic acids research2014
MORPHIN: a web tool for human disease research by projecting model organism biology onto a human integrated gene network.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.
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Who cites it
10 citing papers in PubMed, 1 synthesis or guideline pooled it.
- OMAMO: orthology-based alternative model organism selection.Bioinformatics (Oxford, England) · 2022Pooled it
- Toxicity by descent: A comparative approach for chemical hazard assessment.Environmental advances · 2022Article
- Found In Translation: a machine learning model for mouse-to-human inference.Nature methods · 2018Article
- iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations.Genome biology · 2017Article
- The Human Phenotype Ontology in 2017.Nucleic acids research · 2017Review
- Algorithms for modeling global and context-specific functional relationship networks.Briefings in bioinformatics · 2016Article
- Applications of comparative evolution to human disease genetics.Current opinion in genetics & development · 2015Review
- Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds.Molecular systems biology · 2015Article
- Yeast Phenomics: An Experimental Approach for Modeling Gene Interaction Networks that Buffer Disease.Genes · 2015Article
- Network Modules of the Cross-Species Genotype-Phenotype Map Reflect the Clinical Severity of Human Diseases.PloS one · 2015Article
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5 authors.
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Abstract
Despite recent advances in human genetics, model organisms are indispensable for human disease research. Most human disease pathways are evolutionally conserved among other species, where they may phenocopy the human condition or be associated with seemingly unrelated phenotypes. Much of the known gene-to-phenotype association information is distributed across diverse databases, growing rapidly due to new experimental techniques. Accessible bioinformatics tools will therefore facilitate translation of discoveries from model organisms into human disease biology. Here, we present a web-based discovery tool for human disease studies, MORPHIN (model organisms projected on a human integrated gene network), which prioritizes the most relevant human diseases for a given set of model organism genes, potentially highlighting new model systems for human diseases and providing context to model organism studies. Conceptually, MORPHIN investigates human diseases by an orthology-based projection of a set of model organism genes onto a genome-scale human gene network. MORPHIN then prioritizes human diseases by relevance to the projected model organism genes using two distinct methods: a conventional overlap-based gene set enrichment analysis and a network-based measure of closeness between the query and disease gene sets capable of detecting associations undetectable by the conventional overlap-based methods. MORPHIN is freely accessible at http://www.inetbio.org/morphin.
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